Back to First build/check report with an "external build node"

This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for nem on xps15


To the developers/maintainers of the nem package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 60/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nem 2.63.0  (landing page)
Holger Froehlich
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/nem
git_branch: devel
git_last_commit: fcaf885
git_last_commit_date: 2020-04-27 14:14:04 -0400 (Mon, 27 Apr 2020)
xps15Linux (Ubuntu 23.04) / x86_64  OK    ERROR  skipped

Summary

Package: nem
Version: 2.63.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data nem
StartedAt: 2023-06-01 12:44:42 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:44:56 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 14.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data nem
###
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* checking for file ‘nem/DESCRIPTION’ ... OK
* preparing ‘nem’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘nem.Rnw’ using Sweave
Warning: Package 'nem' is deprecated and will be removed from Bioconductor
  version 3.12

Error: processing vignette 'nem.Rnw' failed with diagnostics:
 chunk 8 
Error in if (!(class(g) %in% c("graphNEL", "matrix"))) stop("Input must be either graphNEL object or adjacency matrix") : 
  the condition has length > 1

--- failed re-building ‘nem.Rnw’

SUMMARY: processing the following file failed:
  ‘nem.Rnw’

Error: Vignette re-building failed.
Execution halted