Back to First build/check report with an "external build node"

This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
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BUILD results for DEXSeq on xps15


To the developers/maintainers of the DEXSeq package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 30/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEXSeq 1.47.0  (landing page)
Alejandro Reyes
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/DEXSeq
git_branch: devel
git_last_commit: 5398518
git_last_commit_date: 2023-04-25 10:20:02 -0400 (Tue, 25 Apr 2023)
xps15Linux (Ubuntu 23.04) / x86_64  OK    ERROR  skipped

Summary

Package: DEXSeq
Version: 1.47.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq
StartedAt: 2023-06-01 12:39:42 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:41:10 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 88.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq
###
##############################################################################
##############################################################################


* checking for file ‘DEXSeq/DESCRIPTION’ ... OK
* preparing ‘DEXSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEXSeq.Rmd’ using rmarkdown
trying URL 'https://ftp.ensembl.org/pub/release-62/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.62.gtf.gz'
Content type 'application/x-gzip' length 2739429 bytes (2.6 MB)
==================================================
downloaded 2.6 MB


Quitting from lines 149-150 [startVignette] (DEXSeq.Rmd)
Error: processing vignette 'DEXSeq.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘DEXSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘DEXSeq.Rmd’

Error: Vignette re-building failed.
Execution halted