| Back to First build/check report with an "external build node" |
This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| xps15 | Linux (Ubuntu 23.04) | x86_64 | 4.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" | 544 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the BiocParallel package: Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 17/91 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| BiocParallel 1.35.2 (landing page) Martin Morgan
| xps15 | Linux (Ubuntu 23.04) / x86_64 | OK | OK | OK | ||||||||
| Package: BiocParallel |
| Version: 1.35.2 |
| Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL BiocParallel |
| StartedAt: 2023-06-01 12:22:26 -0700 (Thu, 01 Jun 2023) |
| EndedAt: 2023-06-01 12:22:47 -0700 (Thu, 01 Jun 2023) |
| EllapsedTime: 21.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL BiocParallel
###
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* installing to library ‘/home/hpages/bbs-3.18-bioc-testing/Rlibs’
* installing *source* package ‘BiocParallel’ ...
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking for g++ -std=gnu++17 option to enable C++11 features... none needed
checking for library containing shm_open... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/mman.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++ (Ubuntu 12.2.0-17ubuntu1) 12.2.0’
using C++11
g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc/R/site-library/BH/include' -I'/home/hpages/bbs-3.18-bioc/R/site-library/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc/R/site-library/BH/include' -I'/home/hpages/bbs-3.18-bioc/R/site-library/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -c ipcmutex.cpp -o ipcmutex.o
In file included from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/apply.hpp:24,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/aux_/fold_impl.hpp:19,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/fold.hpp:20,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/remove_if.hpp:18,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/remove.hpp:18,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/function_types/components.hpp:44,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/function_types/is_member_function_pointer.hpp:14,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/tti/detail/dmem_fun.hpp:10,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/tti/has_member_function.hpp:15,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/uuid/random_generator.hpp:20,
from /home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:3:
/home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
/home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
/home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
/home/hpages/bbs-3.18-bioc/R/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++ -std=gnu++11 -shared -L/usr/local/lib -o BiocParallel.so cpp11.o ipcmutex.o
installing to /home/hpages/bbs-3.18-bioc-testing/Rlibs/00LOCK-BiocParallel/00new/BiocParallel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocParallel)