Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:20 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2079/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
supraHex 1.40.0 (landing page) Hai Fang
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | NA | ||||||||
To the developers/maintainers of the supraHex package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: supraHex |
Version: 1.40.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.40.0.tar.gz |
StartedAt: 2024-04-18 05:43:29 -0400 (Thu, 18 Apr 2024) |
EndedAt: 2024-04-18 05:44:51 -0400 (Thu, 18 Apr 2024) |
EllapsedTime: 81.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: supraHex.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/supraHex.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘supraHex/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘supraHex’ version ‘1.40.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘supraHex’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
name | user | system | elapsed | |
sBMH | 0.064 | 0.007 | 0.071 | |
sCompReorder | 2.504 | 0.160 | 2.692 | |
sDistance | 0.263 | 0.008 | 0.276 | |
sDmat | 0.303 | 0.008 | 0.313 | |
sDmatCluster | 0.417 | 0.013 | 0.454 | |
sDmatMinima | 0.327 | 0.007 | 0.348 | |
sHexDist | 0.008 | 0.001 | 0.008 | |
sHexGrid | 0.002 | 0.000 | 0.003 | |
sHexGridVariant | 0.002 | 0.001 | 0.003 | |
sHexPolygon | 0.088 | 0.001 | 0.090 | |
sInitial | 0.007 | 0.001 | 0.008 | |
sMapOverlay | 0.347 | 0.014 | 0.362 | |
sNeighAny | 0.013 | 0.000 | 0.014 | |
sNeighDirect | 0.008 | 0.000 | 0.008 | |
sPipeline | 0.000 | 0.000 | 0.001 | |
sTopology | 0.046 | 0.009 | 0.058 | |
sTrainBatch | 0.037 | 0.002 | 0.040 | |
sTrainSeq | 0.337 | 0.006 | 0.344 | |
sTrainology | 0.016 | 0.001 | 0.017 | |
sWriteData | 0.808 | 0.048 | 0.868 | |
visColoralpha | 0.004 | 0.001 | 0.004 | |
visColorbar | 0.020 | 0.001 | 0.022 | |
visColormap | 0.002 | 0.000 | 0.003 | |
visCompReorder | 3.666 | 0.434 | 4.148 | |
visDmatCluster | 0.000 | 0.001 | 0.000 | |
visDmatHeatmap | 0 | 0 | 0 | |
visHeatmap | 0.099 | 0.004 | 0.106 | |
visHeatmapAdv | 0.337 | 0.012 | 0.352 | |
visHexAnimate | 0.001 | 0.000 | 0.002 | |
visHexBarplot | 0.736 | 0.044 | 0.805 | |
visHexComp | 0.261 | 0.014 | 0.301 | |
visHexGrid | 0.259 | 0.006 | 0.271 | |
visHexMapping | 1.507 | 0.080 | 1.628 | |
visHexMulComp | 0.993 | 0.053 | 1.055 | |
visHexPattern | 1.506 | 0.123 | 1.689 | |
visKernels | 0.013 | 0.006 | 0.019 | |
visTreeBSclust | 0.001 | 0.000 | 0.001 | |
visTreeBootstrap | 0 | 0 | 0 | |
visVp | 0.015 | 0.006 | 0.022 | |