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This page was generated on 2024-04-18 11:32:20 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
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Package 2079/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.40.0  (landing page)
Hai Fang
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: RELEASE_3_18
git_last_commit: 9853348
git_last_commit_date: 2023-10-24 09:55:27 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    OK    NA  

CHECK results for supraHex on kjohnson1


To the developers/maintainers of the supraHex package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: supraHex
Version: 1.40.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.40.0.tar.gz
StartedAt: 2024-04-18 05:43:29 -0400 (Thu, 18 Apr 2024)
EndedAt: 2024-04-18 05:44:51 -0400 (Thu, 18 Apr 2024)
EllapsedTime: 81.0 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.40.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/supraHex.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.40.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0640.0070.071
sCompReorder2.5040.1602.692
sDistance0.2630.0080.276
sDmat0.3030.0080.313
sDmatCluster0.4170.0130.454
sDmatMinima0.3270.0070.348
sHexDist0.0080.0010.008
sHexGrid0.0020.0000.003
sHexGridVariant0.0020.0010.003
sHexPolygon0.0880.0010.090
sInitial0.0070.0010.008
sMapOverlay0.3470.0140.362
sNeighAny0.0130.0000.014
sNeighDirect0.0080.0000.008
sPipeline0.0000.0000.001
sTopology0.0460.0090.058
sTrainBatch0.0370.0020.040
sTrainSeq0.3370.0060.344
sTrainology0.0160.0010.017
sWriteData0.8080.0480.868
visColoralpha0.0040.0010.004
visColorbar0.0200.0010.022
visColormap0.0020.0000.003
visCompReorder3.6660.4344.148
visDmatCluster0.0000.0010.000
visDmatHeatmap000
visHeatmap0.0990.0040.106
visHeatmapAdv0.3370.0120.352
visHexAnimate0.0010.0000.002
visHexBarplot0.7360.0440.805
visHexComp0.2610.0140.301
visHexGrid0.2590.0060.271
visHexMapping1.5070.0801.628
visHexMulComp0.9930.0531.055
visHexPattern1.5060.1231.689
visKernels0.0130.0060.019
visTreeBSclust0.0010.0000.001
visTreeBootstrap000
visVp0.0150.0060.022