Mac ARM64 build report for BioC 3.18 - CHECK results for rGenomeTracks on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
kjohnson1	macOS 13.6.1 Ventura	arm64	4.3.3 (2024-02-29) -- "Angel Food Cake"	4388
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rGenomeTracks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rGenomeTracks_1.8.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/rGenomeTracks.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rGenomeTracks/DESCRIPTION’ ... OK
* this is package ‘rGenomeTracks’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rGenomeTracks’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL rGenomeTracks
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘rGenomeTracks’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rGenomeTracks)

Tests output


R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(rGenomeTracks)
> 
> test_check("rGenomeTracks")
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 13 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
  2.696   0.239   2.966

Example timings

name	user	system	elapsed
epilogos_json	0.008	0.004	0.011
install_pyGenomeTracks	0.000	0.001	0.000
plot_gtracks	0.000	0.000	0.001
plus-genome_track-genome_track-method	0.004	0.001	0.006
track_bed	0.003	0.001	0.005
track_bedgraph	0.003	0.001	0.004
track_bedgraph_matrix	0.001	0.001	0.002
track_bigwig	0.003	0.001	0.004
track_domains	0.002	0.002	0.004
track_epilogos	0.004	0.004	0.008
track_gtf	0.001	0.001	0.002
track_hic_matrix	0.000	0.000	0.001
track_hlines	0.002	0.001	0.002
track_links	0.003	0.002	0.005
track_narrow_peak	0.006	0.002	0.008
track_scalebar	0.003	0.001	0.004
track_spacer	0.003	0.001	0.005
track_vlines	0.003	0.001	0.005
track_x_axis	0.001	0.001	0.002

CHECK results for rGenomeTracks on kjohnson1

Summary

Command output

Installation output

Tests output

Example timings