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This page was generated on 2024-04-18 11:32:15 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1546/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phyloseq 1.46.0  (landing page)
Paul J. McMurdie
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/phyloseq
git_branch: RELEASE_3_18
git_last_commit: 7320133
git_last_commit_date: 2023-10-24 09:49:18 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for phyloseq on kjohnson1


To the developers/maintainers of the phyloseq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: phyloseq
Version: 1.46.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
StartedAt: 2024-04-16 23:44:57 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 23:46:52 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 114.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
###
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* checking for file ‘phyloseq/DESCRIPTION’ ... OK
* preparing ‘phyloseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘phyloseq-FAQ.Rmd’ using rmarkdown
2024-04-16 23:45:37.885 R[58632:450085509] XType: Using static font registry.
--- finished re-building ‘phyloseq-FAQ.Rmd’

--- re-building ‘phyloseq-analysis.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-analysis.Rmd’

--- re-building ‘phyloseq-basics.Rmd’ using rmarkdown
YAML parse exception at line 2, column 6,
while scanning a block scalar:
did not find expected comment or line break
Error: processing vignette 'phyloseq-basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 64
--- failed re-building ‘phyloseq-basics.Rmd’

--- re-building ‘phyloseq-mixture-models.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-mixture-models.Rmd’

SUMMARY: processing the following file failed:
  ‘phyloseq-basics.Rmd’

Error: Vignette re-building failed.
Execution halted