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This page was generated on 2024-04-18 11:32:15 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1511/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.36.0  (landing page)
Augustin Luna
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/paxtoolsr
git_branch: RELEASE_3_18
git_last_commit: efd04f2
git_last_commit_date: 2023-10-24 10:39:18 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for paxtoolsr on kjohnson1


To the developers/maintainers of the paxtoolsr package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: paxtoolsr
Version: 1.36.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
StartedAt: 2024-04-16 23:33:47 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 23:34:02 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 15.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
###
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* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* preparing ‘paxtoolsr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_paxtoolsr.Rmd’ using rmarkdown
2024-04-16 23:33:59,771 776  [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2024-04-16 23:34:00,397 1402 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)

Quitting from lines 169-171 [searchResultsExampleVerbose] (using_paxtoolsr.Rmd)
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
Received HTTP/0.9 when not allowed
--- failed re-building ‘using_paxtoolsr.Rmd’

SUMMARY: processing the following file failed:
  ‘using_paxtoolsr.Rmd’

Error: Vignette re-building failed.
Execution halted