This page was generated on 2024-04-18 11:32:15 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake"
| 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
| oneSENSE 1.24.0 (landing page) Yong Kee Tan
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024) |
git_url: https://git.bioconductor.org/packages/oneSENSE |
git_branch: RELEASE_3_18 |
git_last_commit: 3f8955f |
git_last_commit_date: 2023-10-24 10:58:24 -0400 (Tue, 24 Oct 2023) |
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | ERROR | OK | | |
CHECK results for oneSENSE on kjohnson1
To the developers/maintainers of the oneSENSE package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:oneSENSE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings oneSENSE_1.24.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/oneSENSE.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘oneSENSE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘oneSENSE’ version ‘1.24.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘oneSENSE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘oneSENSE-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OneSmapperFlour
> ### Title: Median heatplot generation
> ### Aliases: OneSmapperFlour
>
> ### ** Examples
>
> webshot::install_phantomjs()
Error in `process_initialize(self, private, command, args, stdin, stdout, …`:
! Native call to `processx_exec` failed
Caused by error in `chain_call(c_processx_exec, command, c(command, args), pty, pty_options, …`:
! cannot start processx process '/Users/biocbuild/Library/Application Support/PhantomJS/phantomjs' (system error 86, Bad CPU type in executable) @unix/processx.c:613 (processx_exec)
---
Backtrace:
1. webshot::install_phantomjs()
2. webshot:::is_phantomjs_version_latest(version)
3. webshot:::phantomjs_version()
4. webshot:::phantomjs_cmd_result("--version", quiet = TRUE)
5. utils::capture.output(invisible(phantom_run(args = args, wait = wait, …
6. base::withVisible(...elt(i))
7. webshot:::phantom_run(args = args, wait = wait, quiet = quiet)
8. callr::process$new(phantom_bin, args = args, stdout = "|", stderr = "|", …
9. local initialize(...)
10. processx:::process_initialize(self, private, command, args, stdin, stdout, …
11. processx:::chain_call(c_processx_exec, command, c(command, args), pty, pty_options, …
12. | base::withCallingHandlers(do.call(".Call", list(.NAME, ...)), error = function(e…
13. | base::do.call(".Call", list(.NAME, ...))
14. | base::.handleSimpleError(function (e) …
15. | local h(simpleError(msg, call))
16. | processx:::throw_error(err, parent = e)
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/oneSENSE.Rcheck/00check.log’
for details.
Installation output
oneSENSE.Rcheck/00install.out
Tests output
Example timings
oneSENSE.Rcheck/oneSENSE-Ex.timings