Aedin Culhane
| Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/made4 |
| git_branch: RELEASE_3_18 |
| git_last_commit: 4fa6232 |
| git_last_commit_date: 2023-10-24 09:34:42 -0400 (Tue, 24 Oct 2023) |
| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:13 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1130/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.76.0 (landing page) Aedin Culhane
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the made4 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: made4 |
| Version: 1.76.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:made4.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings made4_1.76.0.tar.gz |
| StartedAt: 2024-04-17 18:03:54 -0400 (Wed, 17 Apr 2024) |
| EndedAt: 2024-04-17 18:06:53 -0400 (Wed, 17 Apr 2024) |
| EllapsedTime: 179.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: made4.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:made4.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings made4_1.76.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/made4.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘made4/DESCRIPTION’ ... OK
* this is package ‘made4’ version ‘1.76.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘made4’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) NCI60.Rd:19: Escaped LaTeX specials: \$
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prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples
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* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/made4.Rcheck/00check.log’
for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘made4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
| name | user | system | elapsed | |
| NCI60 | 0.009 | 0.004 | 0.012 | |
| bet.coinertia | 0.011 | 0.001 | 0.012 | |
| between.graph | 0.346 | 0.015 | 0.365 | |
| bga | 0.919 | 0.022 | 0.946 | |
| bga.jackknife | 1.210 | 0.065 | 1.286 | |
| bga.suppl | 0.337 | 0.014 | 0.352 | |
| cia | 0.185 | 0.015 | 0.201 | |
| commonMap | 0.027 | 0.002 | 0.029 | |
| comparelists | 0.001 | 0.000 | 0.001 | |
| do3d | 0.316 | 0.016 | 0.334 | |
| genes1d | 0.096 | 0.011 | 0.108 | |
| getcol | 0.046 | 0.003 | 0.048 | |
| graph1D | 0.066 | 0.008 | 0.074 | |
| heatplot | 1.455 | 0.105 | 1.579 | |
| html3D | 0.193 | 0.014 | 0.209 | |
| isDataFrame | 0.018 | 0.005 | 0.026 | |
| khan | 0.009 | 0.003 | 0.014 | |
| ord | 0.209 | 0.019 | 0.234 | |
| overview | 0.129 | 0.011 | 0.140 | |
| plotarrays | 0.230 | 0.014 | 0.245 | |
| plotgenes | 0.110 | 0.010 | 0.123 | |
| prettyDend | 0.096 | 0.009 | 0.108 | |
| randomiser | 0.002 | 0.001 | 0.004 | |
| s.var | 0.208 | 0.009 | 0.219 | |
| sumstats | 0.204 | 0.010 | 0.216 | |
| suppl | 0.409 | 0.022 | 0.434 | |
| topgenes | 0.076 | 0.007 | 0.086 | |