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This page was generated on 2024-04-18 11:32:21 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2201/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UCell 2.6.2  (landing page)
Massimo Andreatta
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/UCell
git_branch: RELEASE_3_18
git_last_commit: 06be2df
git_last_commit_date: 2023-11-06 12:18:54 -0400 (Mon, 06 Nov 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for UCell on kjohnson1


To the developers/maintainers of the UCell package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: UCell
Version: 2.6.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCell
StartedAt: 2024-04-17 04:29:23 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 04:37:32 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 489.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCell
###
##############################################################################
##############################################################################


* checking for file ‘UCell/DESCRIPTION’ ... OK
* preparing ‘UCell’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UCell_Seurat.Rmd’ using rmarkdown
Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
2024-04-17 04:32:11.716 R[60100:450637133] XType: Using static font registry.
--- finished re-building ‘UCell_Seurat.Rmd’

--- re-building ‘UCell_sce.Rmd’ using rmarkdown

Quitting from lines 64-73 [unnamed-chunk-4] (UCell_sce.Rmd)
Error: processing vignette 'UCell_sce.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘UCell_sce.Rmd’

--- re-building ‘UCell_vignette_basic.Rmd’ using rmarkdown
--- finished re-building ‘UCell_vignette_basic.Rmd’

SUMMARY: processing the following file failed:
  ‘UCell_sce.Rmd’

Error: Vignette re-building failed.
Execution halted