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This page was generated on 2024-04-18 11:32:17 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
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Package 1696/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
REBET 1.20.0  (landing page)
Bill Wheeler
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/REBET
git_branch: RELEASE_3_18
git_last_commit: 5ca181c
git_last_commit_date: 2023-10-24 11:07:20 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for REBET on kjohnson1


To the developers/maintainers of the REBET package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: REBET
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL REBET
StartedAt: 2024-04-16 12:50:27 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 12:50:34 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 7.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL REBET
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘REBET’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c source.c -o source.o
source.c:58:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static double * dVec_alloc(n, initFlag, initVal)
                ^
source.c:76:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static double ** dMat_alloc(nrow, ncol, initFlag, initVal)
                 ^
source.c:92:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static void matrix_free(x, n)
            ^
source.c:105:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static void vecIntoMat(vec, nrow, ncol, ret)
            ^
source.c:123:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static void mult_stVec_stVec(X, invXtX, n, m, ret)
            ^
source.c:149:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static void mult_stVec_scalar(X, n, col, c, ret)
            ^
source.c:165:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static void mult_vec_TstVec(vec, TstVec, n, m, ret)
            ^
source.c:189:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
static double dotProd(v1, v2, n)
              ^
source.c:205:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void SIGMA2_cont(G, p_nsub, p_nsnp, X, p_ncov, invXtX, p_tildeSigma, ret)
     ^
source.c:297:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void SIGMA2_binary(G, p_nsub, p_nsnp, X, p_ncov, invXtX, d, ret)
     ^
source.c:388:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype]
void computeXtDX(X, d, p_nsub, p_ncov, ret)
     ^
11 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o REBET.so source.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-REBET/00new/REBET/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (REBET)