Denes Turei
| Snapshot Date: 2024-03-05 09:00:03 -0500 (Tue, 05 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/OmnipathR |
| git_branch: RELEASE_3_18 |
| git_last_commit: b1b2bab |
| git_last_commit_date: 2023-10-25 11:47:10 -0500 (Wed, 25 Oct 2023) |
| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-03-07 14:40:00 -0500 (Thu, 07 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.2 (2023-10-31) -- "Eye Holes" | 4346 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1452/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.10.1 (landing page) Denes Turei
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the OmnipathR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OmnipathR |
| Version: 3.10.1 |
| Command: rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.10.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir |
| StartedAt: 2024-03-07 09:46:20 -0500 (Thu, 07 Mar 2024) |
| EndedAt: 2024-03-07 09:46:40 -0500 (Thu, 07 Mar 2024) |
| EllapsedTime: 20.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: OmnipathR_3.10.1.tgz |
| PackageFileSize: 3.177 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_3.10.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OmnipathR.buildbin-libdir OmnipathR_3.10.1.tar.gz' >>>>>>> * installing *source* package ‘OmnipathR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-03-07 09:46:35] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-03-07 09:46:35] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:35] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-03-07 09:46:35] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-03-07 09:46:35] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-03-07 09:46:35] [TRACE] [OmnipathR] Contains 6 files. [2024-03-07 09:46:35] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-03-07 09:46:35] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-03-07 09:46:35] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:35] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-03-07 09:46:36] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2024-03-07 09:46:36] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-03-07 09:46:36] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:36] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-03-07 09:46:36] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:36] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-03-07 09:46:36] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:36] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-03-07 09:46:36] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:36] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-03-07 09:46:38] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-03-07 09:46:38] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:38] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Contains 1 files. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-03-07 09:46:38] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:38] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2024-03-07 09:46:38] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-03-07 09:46:38] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:38] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-03-07 09:46:38] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:38] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-03-07 09:46:38] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:38] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-03-07 09:46:38] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-03-07 09:46:38] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)