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This page was generated on 2024-04-18 11:32:10 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
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Package 679/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExperimentHub 2.10.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/ExperimentHub
git_branch: RELEASE_3_18
git_last_commit: f9cb6a0
git_last_commit_date: 2023-10-24 10:48:01 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for ExperimentHub on kjohnson1


To the developers/maintainers of the ExperimentHub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ExperimentHub
Version: 2.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.10.0.tar.gz
StartedAt: 2024-04-17 13:26:03 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 13:28:16 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 133.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: ExperimentHub.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.10.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/ExperimentHub.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHub’ version ‘2.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:183-189: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:190-211: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:212-220: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:221-225: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:237-241: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:247-258: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:259-262: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:263-266: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:267-274: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:275-282: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:283-288: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:295-299: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/ExperimentHub.Rcheck/00check.log’
for details.



Installation output

ExperimentHub.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ExperimentHub
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘ExperimentHub’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ExperimentHub)

Tests output


Example timings

ExperimentHub.Rcheck/ExperimentHub-Ex.timings

nameusersystemelapsed
ExperimentHub-class1.9820.1462.911
getExperimentHubOption0.0010.0000.001
listResources000