Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:10 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 679/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ExperimentHub 2.10.0 (landing page) Bioconductor Package Maintainer
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | WARNINGS | OK | ||||||||
To the developers/maintainers of the ExperimentHub package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ExperimentHub |
Version: 2.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.10.0.tar.gz |
StartedAt: 2024-04-17 13:26:03 -0400 (Wed, 17 Apr 2024) |
EndedAt: 2024-04-17 13:28:16 -0400 (Wed, 17 Apr 2024) |
EllapsedTime: 133.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: ExperimentHub.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/ExperimentHub.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ExperimentHub/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ExperimentHub’ version ‘2.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ExperimentHub’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:183-189: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:190-211: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:212-220: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:221-225: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:237-241: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:247-258: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:259-262: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:263-266: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:267-274: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:275-282: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:283-288: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:295-299: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/ExperimentHub.Rcheck/00check.log’ for details.
ExperimentHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ExperimentHub ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘ExperimentHub’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub)
ExperimentHub.Rcheck/ExperimentHub-Ex.timings
name | user | system | elapsed | |
ExperimentHub-class | 1.982 | 0.146 | 2.911 | |
getExperimentHubOption | 0.001 | 0.000 | 0.001 | |
listResources | 0 | 0 | 0 | |