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This page was generated on 2024-04-18 11:32:08 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 441/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoSIA 1.2.0  (landing page)
Amanda D. Clark
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/CoSIA
git_branch: RELEASE_3_18
git_last_commit: d957b0a
git_last_commit_date: 2023-10-24 11:49:07 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for CoSIA on kjohnson1


To the developers/maintainers of the CoSIA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CoSIA
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoSIA
StartedAt: 2024-04-16 16:08:59 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 16:19:34 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 635.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoSIA
###
##############################################################################
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* checking for file ‘CoSIA/DESCRIPTION’ ... OK
* preparing ‘CoSIA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoSIA_Intro.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/CoSIAdata_1.2.0.tar.gz'
Content type 'application/x-gzip' length 304008 bytes (296 KB)
==================================================
downloaded 296 KB

* installing *source* package ‘CoSIAdata’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CoSIAdata)

The downloaded source packages are in
	'/private/tmp/RtmpWTaiDw/downloaded_packages'

Quitting from lines 104-105 [getTissues_2] (CoSIA_Intro.Rmd)
Error: processing vignette 'CoSIA_Intro.Rmd' failed with diagnostics:
invalid list argument: all variables should have the same length
--- failed re-building ‘CoSIA_Intro.Rmd’

SUMMARY: processing the following file failed:
  ‘CoSIA_Intro.Rmd’

Error: Vignette re-building failed.
Execution halted