Back to Long Tests report for BioC 3.18

This page was generated on 2024-03-02 23:55:03 -0500 (Sat, 02 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 12/30HostnameOS / ArchCHECK
biodbNcbi 1.6.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-03-02 09:55:02 -0500 (Sat, 02 Mar 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_18
git_last_commit: ef9afdc
git_last_commit_date: 2023-10-24 11:40:29 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino4Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway


To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbNcbi
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.6.0.tar.gz
StartedAt: 2024-03-02 15:00:50 -0500 (Sat, 02 Mar 2024)
EndedAt: 2024-03-02 15:02:45 -0500 (Sat, 02 Mar 2024)
EllapsedTime: 114.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-03-02 15:01:37.032][biodb::testContext]
biodb.INFO [2024-03-02 15:01:37.035][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:01:37.036][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-03-02 15:01:37.037][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:01:37.038][biodb::testContext]
biodb.INFO [2024-03-02 15:01:37.044][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:01:37.046][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 15:01:37.053][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:37.053][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 15:01:37.054][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 15:01:37.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.058][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 15:01:37.074][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 15:01:37.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.078][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 15:01:37.078][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 15:01:37.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.082][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 15:01:37.083][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 15:01:37.084][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 15:01:37.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.087][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 15:01:37.088][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 15:01:37.088][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 15:01:37.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.091][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 15:01:37.092][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 15:01:37.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.095][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 15:01:37.096][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 15:01:37.097][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 15:01:37.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.100][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 15:01:37.101][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 15:01:37.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.105][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 15:01:37.106][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 15:01:37.107][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 15:01:37.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.110][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:01:37.111][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 15:01:37.111][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 15:01:37.112][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 15:01:37.113][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 15:01:37.114][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 15:01:37.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.117][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 15:01:37.118][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 15:01:37.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.130][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 15:01:37.131][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 15:01:37.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.133][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 15:01:37.134][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 15:01:37.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.137][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 15:01:37.138][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 15:01:37.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.140][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 15:01:37.141][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 15:01:37.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.144][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:01:37.145][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 15:01:37.162][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 15:01:37.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.165][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 15:01:37.166][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 15:01:37.167][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 15:01:37.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.172][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 15:01:37.197][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.209][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 15:01:37.210][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.210][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.211][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.212][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.213][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.213][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.214][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:37.215][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.216][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.217][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 15:01:37.217][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.218][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.219][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.220][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:37.220][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:37.220][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:37.220][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:01:37.220][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:01:37.221][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:37.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.222][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.223][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.224][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.224][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.225][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.226][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.227][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.227][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.228][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.229][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.230][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 15:01:37.231][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.232][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:01:37.233][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.234][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.234][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.235][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.236][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.237][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.237][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:01:37.238][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.239][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.240][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 15:01:37.240][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.241][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.242][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.243][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:37.243][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:37.243][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:37.243][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:01:37.243][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:01:37.244][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:37.244][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.246][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.247][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.247][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.248][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.249][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.250][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.250][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.251][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.252][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.253][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 15:01:37.255][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.255][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 15:01:37.256][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.258][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.259][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.259][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.260][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.261][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:37.262][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.263][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.263][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 15:01:37.264][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.265][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.266][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.267][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.268][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:37.269][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.269][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.270][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.271][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.272][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.273][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.274][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.275][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.275][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.276][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.277][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 15:01:37.278][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.279][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:01:37.280][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.281][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.282][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.282][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.283][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.284][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.285][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:01:37.286][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.286][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.287][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 15:01:37.288][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.289][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.290][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.290][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.291][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:37.292][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.293][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.296][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.297][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.298][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.298][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.299][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.303][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:37.303][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.367][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 15:01:37.370][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 15:01:37.372][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 15:01:37.373][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 15:01:37.374][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 15:01:37.375][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 15:01:37.376][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 15:01:37.377][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 15:01:37.378][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 15:01:37.379][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 15:01:37.380][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 15:01:37.381][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 15:01:37.382][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 15:01:37.383][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 15:01:37.384][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:01:37.385][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:01:37.386][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 15:01:37.387][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 15:01:37.388][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 15:01:37.389][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 15:01:37.390][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 15:01:37.391][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 15:01:37.393][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 15:01:37.394][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 15:01:37.395][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 15:01:37.396][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 15:01:37.397][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 15:01:37.398][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 15:01:37.399][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 15:01:37.400][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 15:01:37.401][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 15:01:37.402][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 15:01:37.403][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 15:01:37.405][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 15:01:37.406][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 15:01:37.407][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 15:01:37.408][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 15:01:37.409][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 15:01:37.410][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 15:01:37.411][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 15:01:37.412][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 15:01:37.413][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 15:01:37.414][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 15:01:37.415][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 15:01:37.417][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 15:01:37.418][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:01:37.419][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 15:01:37.420][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 15:01:37.421][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 15:01:37.422][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 15:01:37.423][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 15:01:37.424][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 15:01:37.425][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 15:01:37.426][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 15:01:37.427][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 15:01:37.428][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 15:01:37.429][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 15:01:37.430][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 15:01:37.431][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 15:01:37.432][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 15:01:37.433][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 15:01:37.434][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 15:01:37.435][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 15:01:37.436][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 15:01:37.437][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 15:01:37.438][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 15:01:37.439][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 15:01:37.440][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 15:01:37.441][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 15:01:37.442][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 15:01:37.443][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 15:01:37.444][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 15:01:37.445][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 15:01:37.446][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 15:01:37.447][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 15:01:37.448][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 15:01:37.449][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 15:01:37.450][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 15:01:37.451][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 15:01:37.452][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 15:01:37.453][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 15:01:37.454][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 15:01:37.455][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 15:01:37.459][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 15:01:37.461][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:01:37.463][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:37.464][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.466][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:37.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:37.556][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-03-02 15:01:37.563][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:01:37.564][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.565][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-03-02 15:01:37.566][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.567][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.567][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.568][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.569][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.569][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.570][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-03-02 15:01:37.571][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.572][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.573][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-03-02 15:01:37.573][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.574][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-03-02 15:01:37.574][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-03-02 15:01:37.575][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.575][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.576][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:01:37.577][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.578][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.578][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.581][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.582][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:37.582][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-03-02 15:01:37.582][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.583][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.584][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.585][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.586][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-03-02 15:01:37.587][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.588][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-03-02 15:01:37.589][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.590][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.591][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.592][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.594][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:01:37.594][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.595][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.596][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-03-02 15:01:37.597][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-03-02 15:01:37.598][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.599][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:37.600][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:01:37.601][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.602][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.605][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.605][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:01:37.605][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:01:37.606][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.608][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.609][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.610][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-03-02 15:01:37.611][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.612][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-03-02 15:01:37.613][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.614][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.614][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.615][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.616][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.617][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.618][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:01:37.618][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.619][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.620][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.621][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:37.622][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.623][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:37.623][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:37.623][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:37.624][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:01:37.625][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.626][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.626][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.627][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.632][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.632][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.633][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:01:37.633][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:01:37.633][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:01:37.634][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.635][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.635][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.636][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:01:37.637][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-03-02 15:01:37.638][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.639][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-03-02 15:01:37.640][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.641][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:37.642][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.642][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.643][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.644][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.645][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:01:37.645][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:37.646][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.647][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-03-02 15:01:37.648][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:37.648][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-03-02 15:01:37.648][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:01:37.649][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:37.650][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:37.651][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:01:37.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:37.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:37.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:37.655][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:37.656][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:01:37.656][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:01:37.656][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:01:37.657][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:37.657][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:37.658][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:37.659][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:01:37.664][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-03-02 15:01:37.665][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:01:37.666][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:01:37.667][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-03-02 15:01:37.668][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:01:37.670][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-03-02 15:01:37.689][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:01:37.690][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-03-02 15:01:37.694][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:01:37.697][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-03-02 15:01:37.700][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:37.701][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:37.702][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-03-02 15:01:37.703][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:37.704][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:37.705][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-03-02 15:01:37.713][biodb::testThat]
biodb.INFO [2024-03-02 15:01:37.714][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 15:01:37.714][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:37.715][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:37.718][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-03-02 15:01:37.720][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:37.723][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:37.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:37.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:37.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:37.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:37.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:37.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:37.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.775][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:37.784][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:37.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:37.897][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-03-02 15:01:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.902][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:37.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:37.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.025][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.049][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.050][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.062][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.063][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.069][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-03-02 15:01:38.111][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:38.112][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:38.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:38.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:38.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:38.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:38.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:38.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:38.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.152][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.153][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.154][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:38.191][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-03-02 15:01:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.320][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.321][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.333][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.334][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.340][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.343][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:38.350][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.351][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 15:01:38.352][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.352][biodb::testThat]
biodb.DEBUG[2024-03-02 15:01:38.354][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-03-02 15:01:38.360][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-03-02 15:01:38.363][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-03-02 15:01:38.364][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-03-02 15:01:38.367][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-03-02 15:01:38.368][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:38.369][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-03-02 15:01:38.370][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:38.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:38.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:38.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:38.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:38.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:38.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:38.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.398][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.399][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.401][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:38.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:38.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:38.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:38.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:38.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:38.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:38.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.457][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.457][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.459][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:38.505][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-03-02 15:01:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:38.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:38.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:01:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:38.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:01:38.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:01:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:38.537][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.538][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 15:01:38.538][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.539][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.544][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.545][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 15:01:38.546][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.547][biodb::testThat]
biodb.WARN [2024-03-02 15:01:38.562][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-03-02 15:01:38.582][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-03-02 15:01:38.590][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.591][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 15:01:38.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.593][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:38.612][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:38.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:38.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:01:38.663][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.664][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 15:01:38.665][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.666][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.673][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.674][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 15:01:38.675][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.676][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.683][biodb::testThat]
biodb.INFO [2024-03-02 15:01:38.684][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 15:01:38.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:38.685][biodb::testThat]
biodb.DEBUG[2024-03-02 15:01:38.689][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-03-02 15:01:43.063][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-03-02 15:01:44.181][biodb::testThat]
biodb.INFO [2024-03-02 15:01:44.182][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 15:01:44.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:44.183][biodb::testThat]
biodb.INFO [2024-03-02 15:01:44.189][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 15:01:44.190][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-03-02 15:01:44.191][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-03-02 15:01:44.192][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 15:01:44.192][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.194][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.195][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-02 15:01:44.204][biodb::testContext]
biodb.INFO [2024-03-02 15:01:44.204][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:01:44.205][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-03-02 15:01:44.206][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:01:44.207][biodb::testContext]
biodb.INFO [2024-03-02 15:01:44.208][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:01:44.210][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 15:01:44.213][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:44.214][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 15:01:44.215][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 15:01:44.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.217][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 15:01:44.218][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 15:01:44.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.221][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 15:01:44.222][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 15:01:44.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.224][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 15:01:44.225][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 15:01:44.226][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 15:01:44.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.229][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 15:01:44.230][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 15:01:44.240][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 15:01:44.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.243][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 15:01:44.244][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 15:01:44.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.247][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 15:01:44.248][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 15:01:44.249][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 15:01:44.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.252][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 15:01:44.253][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 15:01:44.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.256][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 15:01:44.257][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 15:01:44.257][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 15:01:44.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.260][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:01:44.261][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 15:01:44.262][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 15:01:44.262][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 15:01:44.263][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 15:01:44.264][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 15:01:44.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.267][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 15:01:44.268][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 15:01:44.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.271][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 15:01:44.271][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 15:01:44.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.274][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 15:01:44.275][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 15:01:44.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.277][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 15:01:44.278][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 15:01:44.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.281][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 15:01:44.282][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 15:01:44.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.285][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:01:44.285][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 15:01:44.302][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 15:01:44.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.305][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 15:01:44.306][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 15:01:44.307][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 15:01:44.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.310][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 15:01:44.311][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.312][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 15:01:44.313][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.314][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.315][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.315][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.316][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.317][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.318][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:44.318][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.319][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.320][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 15:01:44.321][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.322][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.322][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.323][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:44.323][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:44.323][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:44.323][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:01:44.323][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:01:44.324][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:44.325][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.326][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.326][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.327][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.328][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.329][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.329][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.330][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.331][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.332][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.332][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.333][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 15:01:44.335][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.336][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:01:44.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.339][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.340][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.341][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:01:44.342][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.343][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.343][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 15:01:44.344][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.345][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.347][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:44.347][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:44.347][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:44.347][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:01:44.347][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:01:44.347][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:44.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.350][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.352][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.352][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.355][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.355][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.356][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 15:01:44.358][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.359][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 15:01:44.359][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.360][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.361][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.362][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.362][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.363][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.364][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:01:44.368][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.369][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.370][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 15:01:44.370][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.371][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.372][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.373][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.373][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:44.374][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.375][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.377][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.378][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.379][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.379][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.380][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.381][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.382][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 15:01:44.383][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.384][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:01:44.385][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.385][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.386][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.387][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.388][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.388][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.389][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:01:44.390][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.391][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.391][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 15:01:44.392][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.393][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.394][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.395][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.395][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:01:44.396][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.397][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.398][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.399][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.400][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.400][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.401][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.402][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.402][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.403][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.404][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:44.405][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.465][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 15:01:44.466][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 15:01:44.467][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 15:01:44.468][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 15:01:44.469][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 15:01:44.470][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 15:01:44.471][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 15:01:44.476][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 15:01:44.477][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 15:01:44.478][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 15:01:44.479][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 15:01:44.480][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 15:01:44.481][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 15:01:44.482][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 15:01:44.483][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:01:44.484][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:01:44.485][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 15:01:44.486][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 15:01:44.487][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 15:01:44.488][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 15:01:44.490][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 15:01:44.491][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 15:01:44.492][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 15:01:44.493][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 15:01:44.494][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 15:01:44.495][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 15:01:44.496][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 15:01:44.497][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 15:01:44.498][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 15:01:44.499][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 15:01:44.501][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 15:01:44.502][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 15:01:44.503][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 15:01:44.504][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 15:01:44.505][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 15:01:44.506][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 15:01:44.507][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 15:01:44.508][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 15:01:44.509][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 15:01:44.511][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 15:01:44.512][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 15:01:44.513][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 15:01:44.514][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 15:01:44.515][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 15:01:44.516][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 15:01:44.517][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:01:44.518][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 15:01:44.519][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 15:01:44.520][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 15:01:44.521][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 15:01:44.522][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 15:01:44.523][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 15:01:44.524][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 15:01:44.526][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 15:01:44.527][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 15:01:44.528][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 15:01:44.529][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 15:01:44.530][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 15:01:44.531][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 15:01:44.532][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 15:01:44.534][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 15:01:44.535][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 15:01:44.536][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 15:01:44.537][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 15:01:44.538][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 15:01:44.539][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 15:01:44.540][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 15:01:44.541][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 15:01:44.542][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 15:01:44.543][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 15:01:44.544][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 15:01:44.545][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 15:01:44.546][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 15:01:44.547][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 15:01:44.548][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 15:01:44.549][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 15:01:44.550][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 15:01:44.551][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 15:01:44.552][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 15:01:44.553][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 15:01:44.554][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 15:01:44.555][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 15:01:44.556][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 15:01:44.558][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 15:01:44.559][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:01:44.560][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:01:44.560][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.562][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:01:44.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:44.647][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-03-02 15:01:44.649][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:01:44.650][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.651][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-03-02 15:01:44.652][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.652][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.653][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.654][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.655][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.655][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.656][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-03-02 15:01:44.657][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.658][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.658][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-03-02 15:01:44.659][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.660][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-03-02 15:01:44.660][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-03-02 15:01:44.660][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.661][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.662][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:01:44.663][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.663][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.664][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.666][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.667][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:44.667][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-03-02 15:01:44.668][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.669][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.669][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.670][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.671][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-03-02 15:01:44.672][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.673][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-03-02 15:01:44.674][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.675][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.676][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.676][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.677][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.678][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.679][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:01:44.680][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.680][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.681][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-03-02 15:01:44.682][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-03-02 15:01:44.683][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.684][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:44.685][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:01:44.686][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.691][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.692][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.693][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.694][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:01:44.694][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:01:44.695][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.695][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.696][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.697][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.698][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-03-02 15:01:44.699][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.700][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-03-02 15:01:44.701][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.701][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.702][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.703][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.704][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.705][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:01:44.706][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.707][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.708][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-03-02 15:01:44.708][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.709][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:01:44.710][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.711][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:01:44.711][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:01:44.711][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:01:44.712][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:01:44.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.716][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.717][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:01:44.717][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:01:44.717][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:01:44.717][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.718][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.719][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.720][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:01:44.721][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-03-02 15:01:44.722][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.723][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-03-02 15:01:44.724][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.724][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:01:44.725][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.726][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.727][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.728][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.728][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:01:44.729][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:01:44.730][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.731][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-03-02 15:01:44.732][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:01:44.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-03-02 15:01:44.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:01:44.733][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:01:44.734][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:01:44.735][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:01:44.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.737][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:01:44.738][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:01:44.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:01:44.739][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:01:44.740][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:01:44.740][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:01:44.740][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:01:44.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:01:44.742][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:01:44.742][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:01:44.743][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:01:44.744][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-03-02 15:01:44.745][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:01:44.747][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:01:44.748][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-03-02 15:01:44.749][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:01:44.750][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-03-02 15:01:44.757][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-03-02 15:01:44.758][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-03-02 15:01:44.759][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-03-02 15:01:44.760][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-03-02 15:01:44.761][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:44.762][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:44.763][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-03-02 15:01:44.764][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:44.765][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:44.821][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-03-02 15:01:44.824][biodb::testThat]
biodb.INFO [2024-03-02 15:01:44.825][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 15:01:44.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:01:44.827][biodb::testThat]
biodb.TRACE[2024-03-02 15:01:44.831][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-03-02 15:01:44.832][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:44.835][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:44.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:44.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:44.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:44.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:44.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:44.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:44.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:44.855][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.862][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:44.863][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:44.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.864][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.865][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.869][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:44.869][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:44.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.875][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:44.876][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:44.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.882][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:44.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:44.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.889][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:44.890][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:44.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:44.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:44.941][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-03-02 15:01:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:44.958][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:44.980][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:01:44.981][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-03-02 15:01:44.982][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:01:44.995][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-03-02 15:01:44.996][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:44.997][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-03-02 15:01:45.006][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:45.007][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:45.009][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-03-02 15:01:45.014][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:45.015][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-03-02 15:01:45.015][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:45.016][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 15:01:45.027][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-03-02 15:01:45.028][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-03-02 15:01:45.029][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:45.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-03-02 15:01:45.032][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:01:45.034][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-03-02 15:01:45.035][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:45.036][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:45.037][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:45.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:45.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:45.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:45.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:45.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:45.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:45.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.063][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:45.064][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:45.104][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-03-02 15:01:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:45.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.218][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:45.219][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.235][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.246][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:45.247][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.248][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.249][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:45.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.259][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.265][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.269][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.270][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.271][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.293][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.294][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.315][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.316][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.317][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.328][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.337][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:45.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.361][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.364][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:45.365][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.377][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.378][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.384][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.385][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.386][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.390][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.391][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.397][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.398][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.403][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.404][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.410][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:45.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.416][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.417][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.418][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.423][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.423][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.431][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-03-02 15:01:45.432][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:45.433][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:45.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:45.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:45.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:45.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:45.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:45.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:45.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:45.451][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.454][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.458][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.459][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.464][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:45.465][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.471][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.475][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:45.476][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.479][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.482][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:45.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.484][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.489][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.490][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.491][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:45.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:45.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:45.533][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-03-02 15:01:45.535][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.538][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:45.550][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:45.551][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-03-02 15:01:45.588][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:45.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-03-02 15:01:45.601][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 15:01:45.602][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:01:45.602][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:45.603][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:45.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:01:45.605][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:01:45.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:45.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:45.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:45.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:45.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:45.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:45.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:45.618][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-03-02 15:01:45.633][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:45.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:45.636][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-03-02 15:01:46.910][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-03-02 15:01:47.976][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:47.977][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-03-02 15:01:47.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-03-02 15:01:47.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-03-02 15:01:48.001][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:01:48.002][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:48.003][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:48.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:48.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:48.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:48.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:48.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:48.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:48.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.027][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.028][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.030][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:48.064][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-03-02 15:01:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.087][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.185][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.209][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.209][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.238][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.238][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.260][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.261][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.284][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.285][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.286][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.308][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.309][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.332][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.334][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.360][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.361][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.373][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.374][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.376][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.380][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.381][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.387][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.393][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.394][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.395][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.400][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.400][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.402][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.406][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:48.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.414][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.414][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.416][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.420][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.421][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.423][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.432][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-03-02 15:01:48.433][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:48.434][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:48.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:48.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:48.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:48.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:48.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:48.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:48.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:48.460][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.462][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.468][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.469][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.480][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.481][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.488][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.489][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.490][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.495][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.498][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.502][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.503][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.505][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:48.548][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-03-02 15:01:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:48.566][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:48.567][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-03-02 15:01:48.568][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:48.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-03-02 15:01:48.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:01:48.572][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-03-02 15:01:48.573][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:48.574][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:48.575][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:48.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:48.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:48.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:48.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:48.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:48.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:48.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.602][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.603][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:48.640][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-03-02 15:01:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.728][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.730][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.742][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.745][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.751][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.752][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.775][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.776][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.789][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.792][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.795][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.799][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.799][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.826][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.827][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.846][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.850][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.850][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.873][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.875][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:48.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.896][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.897][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.910][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.911][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:48.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.922][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.923][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:48.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.932][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.936][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:48.937][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:48.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.943][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.944][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:48.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.950][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:48.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:48.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.957][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.958][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:48.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.959][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.963][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.964][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:48.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:48.973][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-03-02 15:01:48.974][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:48.975][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:48.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:48.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:48.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:48.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:48.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:48.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:48.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:48.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:48.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:48.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:48.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.004][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:49.005][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:49.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.011][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:49.012][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.018][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:49.019][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:49.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.020][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.025][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:49.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:49.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.033][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:49.034][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:49.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:49.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:49.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:49.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:49.092][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-03-02 15:01:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.098][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:49.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:49.111][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:49.112][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-03-02 15:01:49.113][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:49.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-03-02 15:01:49.115][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 15:01:49.116][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:01:49.117][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:49.118][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:49.119][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:01:49.120][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:01:49.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:49.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:49.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:49.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:49.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:49.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:49.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:49.160][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-03-02 15:01:49.172][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:49.173][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:49.184][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-03-02 15:01:50.530][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-03-02 15:01:51.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:51.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-03-02 15:01:51.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-03-02 15:01:51.868][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-03-02 15:01:51.869][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:01:51.870][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:51.871][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:51.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:51.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:51.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:51.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:51.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:51.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:51.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.897][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:51.898][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:51.945][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-03-02 15:01:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:51.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:51.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:51.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:51.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:51.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:51.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.029][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:52.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.057][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:52.058][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.082][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:52.083][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.106][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.107][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.109][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.130][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.131][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.159][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.160][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:52.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.182][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:52.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.199][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.205][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:52.206][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.219][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.220][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.226][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.227][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.229][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.233][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.240][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.241][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.247][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.248][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.254][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:52.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.256][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.265][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.266][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.268][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.272][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.273][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.288][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-03-02 15:01:52.289][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:52.291][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:52.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:52.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:52.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:52.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:52.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:52.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:52.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:52.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.333][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.338][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.339][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.346][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:52.347][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.348][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.354][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:52.354][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.356][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.361][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:52.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.369][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.370][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:52.431][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-03-02 15:01:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:52.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:52.448][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:52.449][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-03-02 15:01:52.450][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:52.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-03-02 15:01:52.452][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 15:01:52.453][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:01:52.454][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:52.455][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:52.455][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:01:52.456][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:01:52.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:52.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:52.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:52.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:52.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:52.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:52.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:52.468][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-03-02 15:01:52.470][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:52.471][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:52.471][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-03-02 15:01:53.476][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-03-02 15:01:54.537][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:54.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-03-02 15:01:54.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-03-02 15:01:54.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-03-02 15:01:54.547][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:01:54.548][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:54.549][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:54.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:54.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:54.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:54.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:54.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:54.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:54.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.578][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:54.579][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.582][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:54.625][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-03-02 15:01:54.626][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.713][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.736][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:54.737][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.738][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:54.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.759][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:54.760][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.783][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.783][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.806][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.807][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.835][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.835][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.857][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:54.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:54.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.860][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.880][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:54.881][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.883][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:54.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.894][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.895][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:54.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.901][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.901][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.907][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.914][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.915][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.925][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.927][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.928][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.932][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:54.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:54.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.939][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.940][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:54.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.945][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.946][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:54.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.948][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.954][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-03-02 15:01:54.955][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:54.956][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:54.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:54.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:54.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:54.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:54.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:54.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:54.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:54.975][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.982][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.983][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.989][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:54.990][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.991][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:54.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:54.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.996][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:54.997][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:54.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:54.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.003][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:55.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:55.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.010][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:55.011][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:55.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:55.059][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-03-02 15:01:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:55.078][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:55.078][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-03-02 15:01:55.079][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:55.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-03-02 15:01:55.081][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 15:01:55.082][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:01:55.083][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:55.084][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:55.085][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:01:55.085][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:01:55.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:55.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:55.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:55.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:55.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:55.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:55.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:55.097][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-03-02 15:01:55.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:55.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:55.101][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-03-02 15:01:56.364][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-03-02 15:01:57.679][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:01:57.680][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-03-02 15:01:57.684][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-03-02 15:01:57.686][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-03-02 15:01:57.688][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:01:57.689][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:57.690][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:01:57.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:57.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:57.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:57.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:57.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:57.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:57.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:57.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.718][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:57.719][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:57.762][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-03-02 15:01:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:57.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:01:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:01:57.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:01:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:01:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:57.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.985][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.987][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:57.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.007][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:58.008][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.010][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.029][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:58.029][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.047][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.050][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.051][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.072][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.073][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.096][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.097][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.099][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.109][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:58.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:58.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.119][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:58.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.143][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:58.143][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.145][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:01:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.157][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.158][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.164][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.165][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.171][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.178][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.178][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.185][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.186][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.192][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:01:58.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.198][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.199][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.205][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.206][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.214][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-03-02 15:01:58.215][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:01:58.216][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:01:58.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:58.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:58.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:58.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:58.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:58.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:58.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:01:58.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.242][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.243][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:01:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:01:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.250][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:58.251][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.253][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:01:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:01:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.258][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:58.259][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:01:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:01:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.266][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:58.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:01:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:01:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.277][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.278][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:01:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:58.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:01:58.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:01:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:01:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:58.320][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-03-02 15:01:58.322][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:01:58.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:01:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:01:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:01:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:01:58.337][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-03-02 15:01:58.338][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-03-02 15:01:58.339][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:01:58.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-03-02 15:01:58.341][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 15:01:58.342][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:01:58.343][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:01:58.344][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:01:58.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:01:58.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-03-02 15:01:58.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:01:58.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:01:58.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:01:58.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:01:58.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:01:58.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:01:58.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:01:58.356][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-03-02 15:01:58.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:01:58.359][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:01:58.360][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-03-02 15:01:59.665][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-03-02 15:02:00.973][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:00.975][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-03-02 15:02:00.978][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-03-02 15:02:00.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-03-02 15:02:00.981][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:00.982][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:00.983][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-03-02 15:02:00.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:00.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:00.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:00.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:00.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:00.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:00.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:01.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.007][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:02:01.008][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:02:01.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:01.043][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-03-02 15:02:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.047][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.127][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.157][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.158][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.188][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.189][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.191][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.205][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.211][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.211][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.234][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.235][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.256][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.256][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.259][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:01.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.280][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:01.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:02:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.301][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:02:01.302][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-03-02 15:02:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.315][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.316][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.317][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.322][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.323][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.324][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.328][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.335][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.336][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.337][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.341][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.342][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.344][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:01.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.355][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.356][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.357][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.362][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.362][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.369][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-03-02 15:02:01.370][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:01.371][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:02:01.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:01.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:01.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:01.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:01.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:01.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:01.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:01.382][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.384][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.388][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.389][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.394][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.395][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.396][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.397][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.398][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.404][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.407][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.408][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:01.442][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-03-02 15:02:01.444][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.451][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:01.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:01.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:01.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.532][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.553][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.554][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.573][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.577][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.578][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.591][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.598][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.599][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.605][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.606][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.607][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:01.614][biodb::testThat]
biodb.INFO [2024-03-02 15:02:01.615][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 15:02:01.616][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:01.616][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:01.618][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-03-02 15:02:01.619][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-03-02 15:02:01.620][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-03-02 15:02:01.622][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-03-02 15:02:01.657][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-03-02 15:02:01.658][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:01.659][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-03-02 15:02:01.660][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-03-02 15:02:01.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:01.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:01.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:01.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:01.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:01.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:01.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:01.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.685][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.691][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.692][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.695][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.698][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.699][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.705][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.706][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.712][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.719][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.720][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:01.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:01.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:01.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:01.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:01.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:01.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:01.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:01.775][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.783][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.784][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.797][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.798][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.804][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.805][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.811][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.818][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.819][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:01.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:01.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:01.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:01.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:01.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:01.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:01.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:01.876][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.883][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.883][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.885][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.889][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.890][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.896][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.897][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.903][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.910][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.911][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.912][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:01.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:01.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:01.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:01.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:01.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:01.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:01.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:01.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:01.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.968][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:01.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:01.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.973][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.974][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:01.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.980][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.981][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.982][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.984][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:01.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.987][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.988][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.993][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.000][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.001][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.005][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:02.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:02.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:02.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:02.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:02.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:02.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:02.071][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.079][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.080][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.087][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.087][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.089][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.094][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.095][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.102][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.110][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.111][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.118][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:02.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:02.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:02.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:02.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:02.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:02.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:02.178][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.181][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.185][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.186][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.192][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.193][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.199][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.199][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.202][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.205][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.212][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.213][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.217][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:02.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:02.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:02.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:02.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:02.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:02.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:02.263][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.270][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.271][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.274][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.277][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.278][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.279][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.280][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.283][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.284][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.286][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.287][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.290][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.297][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.298][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:02.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:02.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:02.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:02.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:02.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:02.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:02.343][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.350][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.352][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.353][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 15:02:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 15:02:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.358][ef$get] Asked field names are: location.
biodb.TRACE[2024-03-02 15:02:02.359][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-03-02 15:02:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.362][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.363][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-03-02 15:02:02.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-03-02 15:02:02.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.370][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-03-02 15:02:02.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.376][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.378][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-03-02 15:02:02.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-03-02 15:02:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.508][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-03-02 15:02:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:02.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:02.618][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.619][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 15:02:02.620][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:02.621][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:02.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.625][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.627][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-03-02 15:02:02.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.650][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-03-02 15:02:02.654][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-03-02 15:02:02.657][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:02.658][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-03-02 15:02:02.659][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:02.660][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-03-02 15:02:02.661][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-03-02 15:02:02.676][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.677][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 15:02:02.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:02.678][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:02.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:02.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-03-02 15:02:02.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:02.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-03-02 15:02:02.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:02.721][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-03-02 15:02:02.735][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.736][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 15:02:02.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:02.737][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:02.745][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.752][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:02.763][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-03-02 15:02:02.764][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:02.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:02.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:02.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.785][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:02.807][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.808][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 15:02:02.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:02.809][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.819][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.819][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 15:02:02.820][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:02.821][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.827][biodb::testThat]
biodb.INFO [2024-03-02 15:02:02.828][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 15:02:02.828][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:02.829][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:02.832][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-03-02 15:02:05.815][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-03-02 15:02:08.994][biodb::testThat]
biodb.INFO [2024-03-02 15:02:08.995][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 15:02:08.996][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:08.996][biodb::testThat]
biodb.INFO [2024-03-02 15:02:09.002][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 15:02:09.003][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-03-02 15:02:09.004][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-03-02 15:02:09.005][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-03-02 15:02:09.011][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-03-02 15:02:09.011][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 15:02:09.012][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.013][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.015][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-02 15:02:09.018][biodb::testContext]
biodb.INFO [2024-03-02 15:02:09.019][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:02:09.020][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-03-02 15:02:09.021][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:02:09.021][biodb::testContext]
biodb.INFO [2024-03-02 15:02:09.023][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:02:09.024][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 15:02:09.027][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:02:09.028][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 15:02:09.029][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 15:02:09.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.032][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 15:02:09.033][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 15:02:09.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.035][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 15:02:09.036][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 15:02:09.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.039][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 15:02:09.040][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 15:02:09.041][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 15:02:09.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.043][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 15:02:09.044][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 15:02:09.045][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 15:02:09.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.047][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 15:02:09.048][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 15:02:09.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.051][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 15:02:09.052][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 15:02:09.052][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 15:02:09.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.055][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 15:02:09.056][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 15:02:09.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.059][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 15:02:09.060][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 15:02:09.060][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 15:02:09.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.063][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:02:09.064][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 15:02:09.065][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 15:02:09.065][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 15:02:09.066][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 15:02:09.067][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 15:02:09.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.069][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 15:02:09.070][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 15:02:09.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.073][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 15:02:09.074][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 15:02:09.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.077][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 15:02:09.078][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 15:02:09.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.080][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 15:02:09.081][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 15:02:09.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.084][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 15:02:09.085][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 15:02:09.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.088][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:02:09.089][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 15:02:09.106][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 15:02:09.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.109][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 15:02:09.110][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 15:02:09.111][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 15:02:09.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.113][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 15:02:09.115][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.116][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 15:02:09.116][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.117][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.118][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.119][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.120][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.120][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.121][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:02:09.122][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.123][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.123][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 15:02:09.124][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.125][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.126][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.126][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:09.126][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:02:09.126][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:02:09.126][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:02:09.126][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:02:09.127][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:09.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.129][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.129][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.131][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.131][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.132][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.133][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.134][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.134][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.135][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.136][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 15:02:09.137][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.138][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:02:09.139][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.140][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.140][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.141][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.142][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.143][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.143][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:02:09.144][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.145][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.145][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 15:02:09.146][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.147][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.148][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.148][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:09.148][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:02:09.148][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:02:09.148][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:02:09.148][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:02:09.149][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:09.150][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.150][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.151][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.153][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.154][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.155][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.155][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.156][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.157][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.158][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 15:02:09.159][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.160][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 15:02:09.161][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.162][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.163][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.164][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.165][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:02:09.166][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.167][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.167][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 15:02:09.175][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.176][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.177][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.177][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.178][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:09.179][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.179][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.180][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.181][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.182][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.183][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.184][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.184][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.185][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.186][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.187][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 15:02:09.188][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.189][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:02:09.189][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.190][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.191][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.192][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.192][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.193][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.194][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:02:09.195][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.195][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.196][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 15:02:09.197][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.197][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.198][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.199][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.200][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:09.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.201][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.202][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.204][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.205][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.206][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.206][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.208][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.209][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:02:09.209][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.269][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 15:02:09.270][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 15:02:09.271][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 15:02:09.272][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 15:02:09.273][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 15:02:09.274][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 15:02:09.275][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 15:02:09.276][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 15:02:09.277][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 15:02:09.278][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 15:02:09.279][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 15:02:09.280][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 15:02:09.281][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 15:02:09.282][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 15:02:09.283][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:02:09.285][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:02:09.286][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 15:02:09.287][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 15:02:09.288][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 15:02:09.289][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 15:02:09.290][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 15:02:09.291][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 15:02:09.292][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 15:02:09.293][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 15:02:09.294][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 15:02:09.295][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 15:02:09.296][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 15:02:09.297][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 15:02:09.298][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 15:02:09.299][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 15:02:09.301][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 15:02:09.302][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 15:02:09.303][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 15:02:09.304][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 15:02:09.305][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 15:02:09.306][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 15:02:09.307][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 15:02:09.308][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 15:02:09.309][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 15:02:09.310][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 15:02:09.312][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 15:02:09.313][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 15:02:09.314][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 15:02:09.315][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 15:02:09.316][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 15:02:09.317][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:02:09.318][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 15:02:09.319][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 15:02:09.320][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 15:02:09.322][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 15:02:09.323][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 15:02:09.324][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 15:02:09.325][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 15:02:09.326][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 15:02:09.327][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 15:02:09.328][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 15:02:09.329][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 15:02:09.330][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 15:02:09.332][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 15:02:09.333][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 15:02:09.334][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 15:02:09.335][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 15:02:09.336][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 15:02:09.337][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 15:02:09.338][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 15:02:09.339][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 15:02:09.340][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 15:02:09.341][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 15:02:09.342][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 15:02:09.344][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 15:02:09.345][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 15:02:09.346][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 15:02:09.347][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 15:02:09.348][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 15:02:09.349][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 15:02:09.350][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 15:02:09.351][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 15:02:09.352][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 15:02:09.353][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 15:02:09.354][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 15:02:09.355][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 15:02:09.356][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 15:02:09.357][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 15:02:09.358][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 15:02:09.360][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:02:09.360][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:02:09.361][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.362][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:09.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:09.450][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-03-02 15:02:09.452][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:02:09.453][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.454][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-03-02 15:02:09.455][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.456][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.456][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.457][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.458][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.459][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.459][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-03-02 15:02:09.460][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.461][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.462][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-03-02 15:02:09.462][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.463][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-03-02 15:02:09.463][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-03-02 15:02:09.464][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.465][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.466][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:02:09.466][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.467][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.468][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.468][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.469][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.470][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.471][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:02:09.471][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-03-02 15:02:09.471][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.472][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.473][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.473][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.474][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-03-02 15:02:09.476][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.476][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-03-02 15:02:09.477][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.478][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.479][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.479][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.480][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.481][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.482][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:02:09.482][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.483][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.484][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-03-02 15:02:09.484][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.485][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-03-02 15:02:09.485][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-03-02 15:02:09.485][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-03-02 15:02:09.485][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-03-02 15:02:09.485][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-03-02 15:02:09.485][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-03-02 15:02:09.486][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.487][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:09.487][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:02:09.488][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.489][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.490][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.490][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.491][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.492][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.492][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:09.492][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:02:09.493][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.494][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.494][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.495][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.496][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-03-02 15:02:09.497][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.498][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-03-02 15:02:09.499][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.499][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.500][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.501][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.502][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.502][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.503][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:02:09.504][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.505][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.505][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-03-02 15:02:09.506][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.507][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:09.508][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.508][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:09.508][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:02:09.508][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:02:09.509][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:02:09.510][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.511][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.511][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.512][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.513][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.514][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:09.514][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:02:09.514][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:02:09.515][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.516][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.516][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.517][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:02:09.518][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-03-02 15:02:09.520][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.520][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-03-02 15:02:09.521][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.522][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:09.523][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.523][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.524][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.525][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.526][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:02:09.526][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:09.527][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.528][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-03-02 15:02:09.529][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:09.529][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-03-02 15:02:09.529][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:02:09.530][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:09.531][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:09.532][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:02:09.532][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.534][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:09.534][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:09.535][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:09.536][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:09.537][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:09.537][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:02:09.537][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:02:09.537][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:09.538][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:09.539][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:09.540][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:02:09.540][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-03-02 15:02:09.542][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:02:09.543][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:02:09.544][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-03-02 15:02:09.545][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:02:09.546][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-03-02 15:02:09.552][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-03-02 15:02:09.553][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-03-02 15:02:09.554][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-03-02 15:02:09.555][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-03-02 15:02:09.556][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:09.556][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:09.557][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-03-02 15:02:09.558][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:09.559][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:09.560][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:02:09.564][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-03-02 15:02:09.567][biodb::testThat]
biodb.INFO [2024-03-02 15:02:09.568][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 15:02:09.569][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:09.569][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:09.572][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-03-02 15:02:09.573][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:09.575][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:09.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:09.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:09.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:09.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:09.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:09.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:09.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:09.589][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.595][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.595][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.597][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.601][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.602][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.609][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.614][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.620][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.621][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.622][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.626][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:09.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.638][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:09.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:09.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.641][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:09.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:09.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.647][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.651][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.652][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.658][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:09.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.664][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.665][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.676][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.677][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:09.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.691][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:09.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:09.759][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-03-02 15:02:09.761][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:09.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:09.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.764][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:09.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:09.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:09.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:09.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:09.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:09.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:09.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:09.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:09.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.842][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.844][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.865][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:09.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:09.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.888][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:09.889][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.890][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.932][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.935][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.938][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.939][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.962][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.963][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:09.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.982][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.983][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:09.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:09.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:09.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.005][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.005][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.007][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.026][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.027][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.048][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.049][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.070][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.071][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.093][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.094][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.115][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.163][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.181][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.181][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.183][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.187][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.193][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.198][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.199][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.206][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.211][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.212][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.217][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.226][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.236][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.237][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.238][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.251][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.257][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.262][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.264][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.268][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.268][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.274][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-03-02 15:02:10.275][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:10.276][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:10.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:10.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:10.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:10.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:10.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:10.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:10.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:10.287][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.293][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.293][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.299][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.299][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.301][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.305][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.306][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.312][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.314][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.318][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.319][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.320][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.325][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:10.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.331][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.333][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.339][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.351][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.352][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.358][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:10.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.365][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.371][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.372][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.374][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.378][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:10.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:10.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:10.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:10.468][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-03-02 15:02:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.473][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:10.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:10.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:10.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:10.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:10.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:10.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:10.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:10.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.549][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.661][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.684][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.685][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.707][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.708][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.731][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.732][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:10.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.784][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.804][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.805][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.840][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.841][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.866][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.867][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.895][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.896][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.897][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.918][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.919][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.920][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.940][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.943][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.953][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:10.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.960][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.961][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:10.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.962][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.966][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.967][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:10.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.973][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.974][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:10.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.979][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.980][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:10.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.981][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.986][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.986][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:10.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.992][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:10.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:10.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:10.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:10.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:10.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:11.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.012][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:11.013][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:11.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.019][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.032][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.039][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.040][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.045][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.046][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.047][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:11.055][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.055][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 15:02:11.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.057][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:11.059][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-03-02 15:02:11.065][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-03-02 15:02:11.067][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-03-02 15:02:11.070][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-03-02 15:02:11.072][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-03-02 15:02:11.073][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:11.074][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-03-02 15:02:11.075][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:11.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:11.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:11.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:11.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:11.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:11.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:11.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:11.086][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.092][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.093][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.099][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.099][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.105][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.106][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.111][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.112][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.119][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.124][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:11.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.127][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.131][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:11.132][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:11.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:11.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:11.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:11.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.151][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:11.151][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:11.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.153][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.157][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:11.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:11.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.163][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.164][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.170][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.171][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.197][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.216][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:11.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:11.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:11.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:11.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:11.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:11.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:11.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:11.261][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.267][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.268][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.274][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.274][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.280][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.281][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.287][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.294][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.294][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.296][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.300][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:11.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.303][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:11.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:11.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:11.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:11.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:11.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:11.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:11.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.326][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:11.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.330][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:11.331][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:11.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.336][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:11.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.339][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.343][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.344][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.345][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.349][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.351][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:11.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:11.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:11.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:11.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:11.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:11.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:11.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:11.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:11.442][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-03-02 15:02:11.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:11.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:11.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:11.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:11.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:11.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:11.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:11.473][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.473][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 15:02:11.474][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.475][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:11.477][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.480][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:11.481][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-03-02 15:02:11.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:11.504][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-03-02 15:02:11.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-03-02 15:02:11.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:11.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-03-02 15:02:11.515][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:11.517][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-03-02 15:02:11.518][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-03-02 15:02:11.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:11.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:11.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.537][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:11.542][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.543][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 15:02:11.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.545][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:11.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:11.620][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-03-02 15:02:11.623][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:11.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-03-02 15:02:11.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:11.627][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-03-02 15:02:11.643][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.644][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 15:02:11.644][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.645][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:11.655][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.659][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:11.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:11.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:11.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:11.706][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.707][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 15:02:11.707][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.708][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.715][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.716][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 15:02:11.717][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.717][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.725][biodb::testThat]
biodb.INFO [2024-03-02 15:02:11.725][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 15:02:11.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:11.727][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:11.730][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-03-02 15:02:11.986][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-03-02 15:02:12.185][biodb::testThat]
biodb.INFO [2024-03-02 15:02:12.186][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 15:02:12.187][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:12.188][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:12.279][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-03-02 15:02:12.366][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:12.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:12.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.369][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.372][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:12.373][biodb::testThat]
biodb.INFO [2024-03-02 15:02:12.374][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-03-02 15:02:12.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:12.375][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:12.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:12.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:12.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:12.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-03-02 15:02:12.475][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-03-02 15:02:12.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.478][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-03-02 15:02:12.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-03-02 15:02:12.548][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-03-02 15:02:12.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.552][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-03-02 15:02:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:12.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:12.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:12.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:12.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.601][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:12.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-03-02 15:02:12.617][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.619][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-03-02 15:02:12.620][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.622][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-03-02 15:02:12.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-03-02 15:02:12.844][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.846][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-03-02 15:02:12.847][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.848][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-03-02 15:02:12.868][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-03-02 15:02:12.871][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-03-02 15:02:12.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.875][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-03-02 15:02:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:12.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:12.929][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:12.931][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.932][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-03-02 15:02:12.933][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.934][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-03-02 15:02:12.948][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-03-02 15:02:12.951][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.952][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-03-02 15:02:12.953][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.955][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-03-02 15:02:12.969][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-03-02 15:02:12.971][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.973][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-03-02 15:02:12.974][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:12.975][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-03-02 15:02:12.994][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-03-02 15:02:12.996][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:12.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-03-02 15:02:12.999][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:13.000][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-03-02 15:02:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:13.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:13.027][biodb::testThat]
biodb.INFO [2024-03-02 15:02:13.028][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-03-02 15:02:13.028][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:13.029][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:13.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:13.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:13.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:13.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:13.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:13.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:13.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:13.086][private$loadEntries] Creating entries from ids [3]: "170429482, 170428354, 170412976".
biodb.DEBUG[2024-03-02 15:02:13.087][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:13.088][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170429482, 170428354, 170412976".
biodb.TRACE[2024-03-02 15:02:13.090][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-03-02 15:02:13.092][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170429482.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170428354.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170412976.xml".
biodb.DEBUG[2024-03-02 15:02:13.093][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:13.094][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:13.095][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:13.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:13.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.113][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.114][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.120][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.120][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.126][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.127][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.133][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.134][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.135][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.139][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.140][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.146][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:13.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:13.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:13.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.153][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:13.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:13.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:13.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:13.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.212][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:13.213][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:13.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.218][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:13.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.221][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.225][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.226][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.232][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.233][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.275][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:13.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:13.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:13.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:13.320][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.326][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.327][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.328][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.333][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.333][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.339][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.340][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.345][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.346][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.348][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.352][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.353][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.359][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:13.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:13.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:13.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:13.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.365][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:13.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:13.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:13.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:13.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.374][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.380][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.384][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:13.385][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:13.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.387][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:13.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:13.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.391][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:13.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.397][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.398][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.410][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:13.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:13.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:13.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.454][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:13.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:13.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:13.498][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.501][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.505][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.506][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.511][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.512][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.518][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.519][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.520][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.524][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.525][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.527][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.531][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.531][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.533][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.537][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:13.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:13.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.540][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:13.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:13.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.543][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:13.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:13.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:13.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:13.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.552][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.563][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:13.564][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:13.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.565][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:13.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.569][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:13.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.572][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:13.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.575][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.576][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.578][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:13.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.582][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.582][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:13.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.588][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:13.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:13.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.606][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:13.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:13.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:13.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:13.683][self$createEntryFromContent] Accession numbers: 170429482, 170428354, 170412976.
biodb.DEBUG[2024-03-02 15:02:13.684][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:13.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.709][private$selectFields]
biodb.TRACE[2024-03-02 15:02:13.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:13.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:13.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.714][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.718][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.721][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.722][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170429482].
biodb.DEBUG[2024-03-02 15:02:13.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.756][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.756][private$selectFields]
biodb.TRACE[2024-03-02 15:02:13.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:13.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:13.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.764][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.766][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.769][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.769][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170428354].
biodb.DEBUG[2024-03-02 15:02:13.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.796][private$selectFields]
biodb.TRACE[2024-03-02 15:02:13.796][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:13.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:13.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.805][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:13.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.809][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:13.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:13.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:13.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:13.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170412976].
biodb.DEBUG[2024-03-02 15:02:13.820][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:13.821][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:13.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:13.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:13.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:13.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:13.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:13.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:13.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:13.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:13.839][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:13.840][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:13.841][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:14.069][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:14.070][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:14.071][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:14.072][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:14.173][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:14.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-03-02 15:02:14.178][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-03-02 15:02:14.180][private$loadEntries] Creating entries from ids [3]: "170438102, 170434730, 170421067".
biodb.DEBUG[2024-03-02 15:02:14.181][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:14.182][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170438102, 170434730, 170421067".
biodb.TRACE[2024-03-02 15:02:14.183][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:14.184][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:14.185][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:14.186][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:14.187][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:14.187][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:14.188][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-03-02 15:02:14.190][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170438102,170434730,170421067/XML".
biodb.DEBUG[2024-03-02 15:02:14.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:14.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:14.193][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170438102,170434730,170421067/XML".
biodb.TRACE[2024-03-02 15:02:14.350][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170438102,170434730,170421067/XML).
biodb.TRACE[2024-03-02 15:02:14.666][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170438102.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170434730.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170421067.xml"
biodb.DEBUG[2024-03-02 15:02:14.668][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:14.669][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:14.670][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:14.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:14.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.688][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.688][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.694][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.695][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.700][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.701][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.707][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.708][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.709][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.714][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.714][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.720][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:14.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:14.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.726][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:14.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:14.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:14.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:14.739][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:14.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.758][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:14.759][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:14.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:14.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.765][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:14.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:14.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.767][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.772][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.772][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.774][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.778][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.779][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.785][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:14.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:14.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:14.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:14.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:14.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:14.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:14.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:14.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:14.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:14.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:14.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.864][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.869][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.869][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.875][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.875][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.877][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.881][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.881][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.887][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.892][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.893][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.899][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:14.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:14.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.905][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:14.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:14.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:14.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:14.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.923][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:14.924][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:14.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.929][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:14.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:14.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.935][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.936][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.941][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.942][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:14.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:14.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:15.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:15.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.041][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.041][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.047][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.048][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.054][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.054][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.056][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.060][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.061][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.066][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.067][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.073][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.079][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.097][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.104][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.110][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.110][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.116][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.117][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:15.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.151][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:15.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:15.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:15.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:15.223][self$createEntryFromContent] Accession numbers: 170438102, 170434730, 170421067.
biodb.DEBUG[2024-03-02 15:02:15.249][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:15.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.284][private$selectFields]
biodb.TRACE[2024-03-02 15:02:15.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:15.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:15.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.294][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.296][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.297][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:15.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.324][private$selectFields]
biodb.TRACE[2024-03-02 15:02:15.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:15.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:15.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.333][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.333][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.334][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.337][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.338][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170434730].
biodb.DEBUG[2024-03-02 15:02:15.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.366][private$selectFields]
biodb.TRACE[2024-03-02 15:02:15.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:15.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:15.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.376][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:15.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.380][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:15.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170421067].
biodb.DEBUG[2024-03-02 15:02:15.391][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:15.392][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:15.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:15.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:15.484][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:15.488][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:15.489][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-03-02 15:02:15.490][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:15.491][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-03-02 15:02:15.493][private$loadEntries] Creating entries from ids [3]: "170449100, 170440362, 170439156".
biodb.DEBUG[2024-03-02 15:02:15.494][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:15.495][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170449100, 170440362, 170439156".
biodb.TRACE[2024-03-02 15:02:15.496][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-03-02 15:02:15.499][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170449100.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170440362.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170439156.xml".
biodb.DEBUG[2024-03-02 15:02:15.500][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:15.501][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:15.502][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:15.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.513][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.520][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.521][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.526][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.527][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.528][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.532][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.533][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.538][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.539][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.544][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.545][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.550][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.557][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.565][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.571][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.575][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.575][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.581][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.587][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.588][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.593][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.594][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.595][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:15.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:15.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:15.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:15.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.688][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.689][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.694][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.695][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.697][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.701][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.702][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.714][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.715][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.722][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.723][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.724][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.728][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.731][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.732][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.735][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.744][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.755][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.761][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.763][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.768][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.768][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.774][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.774][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:15.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:15.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:15.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:15.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:15.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:15.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:15.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:15.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:15.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:15.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:15.860][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.867][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.868][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.873][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.874][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.880][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.881][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.886][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.893][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.894][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.899][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:15.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.906][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.908][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.914][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:15.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.920][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:15.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.924][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.925][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.928][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:15.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.931][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.933][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:15.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.937][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.938][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.940][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.944][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.945][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.947][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:15.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.968][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:15.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:15.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:15.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:15.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:16.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:16.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:16.056][self$createEntryFromContent] Accession numbers: 170449100, 170440362, 170439156.
biodb.DEBUG[2024-03-02 15:02:16.057][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:16.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:16.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:16.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:16.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:16.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:16.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:16.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.075][private$selectFields]
biodb.TRACE[2024-03-02 15:02:16.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:16.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:16.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.080][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.084][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.085][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.089][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:16.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:16.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:16.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:16.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:16.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:16.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:16.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:16.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:16.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.116][private$selectFields]
biodb.TRACE[2024-03-02 15:02:16.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:16.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:16.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.127][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.131][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170440362].
biodb.DEBUG[2024-03-02 15:02:16.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:16.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:16.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:16.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:16.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:16.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:16.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.159][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.159][private$selectFields]
biodb.TRACE[2024-03-02 15:02:16.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:16.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:16.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.165][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.170][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:16.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.174][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:16.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:16.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:16.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:16.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:16.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:16.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:16.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:16.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:16.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:16.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:16.205][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:16.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:16.211][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:16.287][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:16.288][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:16.290][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:16.292][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:16.386][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:16.388][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-03-02 15:02:16.392][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-03-02 15:02:16.393][private$loadEntries] Creating entries from ids [2]: "170451225, 170439181".
biodb.DEBUG[2024-03-02 15:02:16.394][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-03-02 15:02:16.396][cch$loadFileContent] Trying to load 2 files from cache: [2]: "170451225, 170439181".
biodb.TRACE[2024-03-02 15:02:16.396][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:16.397][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:16.398][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:16.399][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:16.400][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:16.401][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:16.414][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-03-02 15:02:16.416][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170451225,170439181/XML".
biodb.DEBUG[2024-03-02 15:02:16.417][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:16.418][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:16.419][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170451225,170439181/XML".
biodb.TRACE[2024-03-02 15:02:16.557][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170451225,170439181/XML).
biodb.TRACE[2024-03-02 15:02:16.786][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170451225.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170439181.xml"
biodb.DEBUG[2024-03-02 15:02:16.788][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:16.789][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-03-02 15:02:16.790][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:16.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:16.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:16.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:16.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:16.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:16.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:16.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:16.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.808][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.809][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.815][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.815][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.821][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.822][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.827][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.828][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.834][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.835][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.840][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:16.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:16.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:16.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.847][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:16.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:16.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.849][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:16.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:16.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:16.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:16.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:16.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:16.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.866][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:16.866][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:16.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.869][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:16.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.872][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:16.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:16.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:16.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.879][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:16.879][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:16.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:16.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.885][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:16.886][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:16.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:16.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:16.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:16.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:16.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:16.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.921][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:16.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.931][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:16.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:16.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:16.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:16.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:16.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:16.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:16.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:16.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:16.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:16.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:16.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:16.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:16.976][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:16.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:16.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.983][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.984][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:16.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:16.999][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.000][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.009][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.016][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.021][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.022][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.028][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.030][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.048][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.054][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.054][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.056][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.060][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.066][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.067][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.073][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.073][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.075][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:17.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.115][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:17.167][self$createEntryFromContent] Accession numbers: 170451225, 170439181.
biodb.DEBUG[2024-03-02 15:02:17.168][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:17.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.186][private$selectFields]
biodb.TRACE[2024-03-02 15:02:17.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:17.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:17.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.195][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.199][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:17.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:17.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.226][private$selectFields]
biodb.TRACE[2024-03-02 15:02:17.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:17.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:17.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.235][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.244][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439181].
biodb.DEBUG[2024-03-02 15:02:17.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.297][private$selectFields]
biodb.TRACE[2024-03-02 15:02:17.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:17.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:17.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.305][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.313][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.316][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.317][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:17.328][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:17.328][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:17.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:17.345][biodb::testThat]
biodb.INFO [2024-03-02 15:02:17.346][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-03-02 15:02:17.347][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:17.347][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:17.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:17.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:17.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:17.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:17.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-03-02 15:02:17.401][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:17.402][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-03-02 15:02:17.404][private$loadEntries] Creating entries from ids [3]: "170313131, 170313130, 170277511".
biodb.DEBUG[2024-03-02 15:02:17.404][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:17.406][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170313131, 170313130, 170277511".
biodb.TRACE[2024-03-02 15:02:17.407][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-03-02 15:02:17.409][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170313131.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170313130.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170277511.xml".
biodb.DEBUG[2024-03-02 15:02:17.410][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:17.411][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:17.412][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:17.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.423][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.429][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.430][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.432][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.436][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.437][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.442][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.443][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.445][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.449][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.450][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.455][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.456][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.457][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.461][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.464][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.467][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.476][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.489][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.494][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.501][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.503][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.507][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.508][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.514][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:17.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:17.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:17.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.598][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.604][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.605][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.606][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.611][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.617][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.618][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.619][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.623][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.624][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.630][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.631][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.636][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.643][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.652][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.663][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.663][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.666][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.669][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.676][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.676][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.682][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.683][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.706][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.715][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:17.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.774][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.776][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.780][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.781][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.782][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.786][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.787][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.792][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.793][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.794][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.799][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.804][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.805][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.810][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.812][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:17.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:17.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.834][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.835][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.840][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.846][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.847][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.852][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.853][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.854][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:17.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:17.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.895][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:17.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:17.961][self$createEntryFromContent] Accession numbers: 170313131, 170313130, 170277511.
biodb.DEBUG[2024-03-02 15:02:17.962][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:17.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:17.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:17.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:17.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:17.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:17.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:17.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.987][private$selectFields]
biodb.TRACE[2024-03-02 15:02:17.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:17.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:17.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:17.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:17.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.997][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:17.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:17.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.001][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170313131].
biodb.DEBUG[2024-03-02 15:02:18.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:18.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:18.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:18.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:18.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:18.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:18.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.030][private$selectFields]
biodb.TRACE[2024-03-02 15:02:18.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:18.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:18.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.039][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.043][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170313130].
biodb.DEBUG[2024-03-02 15:02:18.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:18.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:18.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:18.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:18.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:18.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:18.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:18.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.070][private$selectFields]
biodb.TRACE[2024-03-02 15:02:18.071][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:18.072][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:18.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.080][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:18.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.084][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170277511].
biodb.DEBUG[2024-03-02 15:02:18.096][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:18.096][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:18.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:18.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:18.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:18.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:18.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:18.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:18.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:18.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:18.115][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:18.115][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:18.117][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:18.198][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:18.199][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:18.200][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:18.201][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:18.293][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:18.295][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-03-02 15:02:18.298][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-03-02 15:02:18.300][private$loadEntries] Creating entries from ids [2]: "170357922, 170189264".
biodb.DEBUG[2024-03-02 15:02:18.301][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-03-02 15:02:18.302][cch$loadFileContent] Trying to load 2 files from cache: [2]: "170357922, 170189264".
biodb.TRACE[2024-03-02 15:02:18.303][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:18.304][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:18.305][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:18.306][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:18.307][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:18.307][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:18.308][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-03-02 15:02:18.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170357922,170189264/XML".
biodb.DEBUG[2024-03-02 15:02:18.311][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:18.312][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:18.313][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170357922,170189264/XML".
biodb.TRACE[2024-03-02 15:02:18.470][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170357922,170189264/XML).
biodb.TRACE[2024-03-02 15:02:18.707][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170357922.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170189264.xml"
biodb.DEBUG[2024-03-02 15:02:18.709][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:18.710][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-03-02 15:02:18.711][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:18.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:18.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:18.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:18.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:18.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:18.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:18.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:18.723][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.729][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.736][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.737][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.738][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.743][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.743][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.749][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.750][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.752][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.756][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.758][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.762][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:18.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:18.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:18.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:18.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:18.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:18.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:18.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:18.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:18.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.794][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.800][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:18.801][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:18.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.803][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:18.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.807][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:18.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:18.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.814][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.815][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.836][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:18.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:18.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:18.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:18.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:18.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:18.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:18.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:18.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:18.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:18.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:18.909][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.915][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.916][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:18.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.922][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.923][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.924][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:18.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.929][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.930][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:18.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.936][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:18.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.942][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.943][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.948][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:18.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:18.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:18.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:18.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:18.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:18.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.963][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:18.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.970][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.974][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:18.975][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:18.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.978][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:18.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:18.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.981][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:18.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:18.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:18.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:18.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.988][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.990][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.995][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:18.997][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:18.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:18.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.001][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:19.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.011][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:19.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.020][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:19.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:19.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:19.102][self$createEntryFromContent] Accession numbers: 170357922, 170189264.
biodb.DEBUG[2024-03-02 15:02:19.103][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:19.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.121][private$selectFields]
biodb.TRACE[2024-03-02 15:02:19.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:19.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:19.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.127][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.132][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.135][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.136][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:19.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170421067].
biodb.DEBUG[2024-03-02 15:02:19.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.165][private$selectFields]
biodb.TRACE[2024-03-02 15:02:19.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:19.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:19.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.175][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.180][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:19.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.191][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170357922].
biodb.DEBUG[2024-03-02 15:02:19.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.209][private$selectFields]
biodb.TRACE[2024-03-02 15:02:19.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:19.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:19.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.218][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.220][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.224][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170189264].
biodb.DEBUG[2024-03-02 15:02:19.236][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:19.236][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:19.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:19.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:19.287][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:19.289][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:19.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-03-02 15:02:19.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:19.293][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-03-02 15:02:19.294][private$loadEntries] Creating entries from ids [2]: "170432251, 170418103".
biodb.DEBUG[2024-03-02 15:02:19.295][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-03-02 15:02:19.297][cch$loadFileContent] Trying to load 2 files from cache: [2]: "170432251, 170418103".
biodb.TRACE[2024-03-02 15:02:19.298][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-03-02 15:02:19.300][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170432251.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170418103.xml".
biodb.DEBUG[2024-03-02 15:02:19.301][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:19.302][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-03-02 15:02:19.303][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:19.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.326][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.330][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.331][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.333][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.337][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.338][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.345][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.346][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.352][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.352][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.359][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.359][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.365][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:19.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:19.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.372][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:19.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:19.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:19.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:19.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:19.380][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:19.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.388][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.392][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:19.393][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:19.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.395][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.399][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:19.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:19.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.401][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.405][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.406][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.408][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.412][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.413][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:19.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.446][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.456][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:19.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.501][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.508][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.509][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.510][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.515][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.515][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.521][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.528][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.529][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.530][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.534][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.535][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.537][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.541][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:19.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:19.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:19.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.548][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:19.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:19.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:19.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:19.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:19.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:19.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.574][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:19.575][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.581][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:19.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:19.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:19.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.588][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.589][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.590][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.594][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.595][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.596][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:19.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:19.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:19.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:19.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:19.688][self$createEntryFromContent] Accession numbers: 170432251, 170418103.
biodb.DEBUG[2024-03-02 15:02:19.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:19.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.707][private$selectFields]
biodb.TRACE[2024-03-02 15:02:19.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:19.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:19.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.717][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:19.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.748][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.748][private$selectFields]
biodb.TRACE[2024-03-02 15:02:19.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:19.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:19.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.753][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.758][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.761][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.762][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170432251].
biodb.DEBUG[2024-03-02 15:02:19.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.790][private$selectFields]
biodb.TRACE[2024-03-02 15:02:19.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:19.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:19.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.795][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:19.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:19.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:19.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170418103].
biodb.DEBUG[2024-03-02 15:02:19.822][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:19.822][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:19.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:19.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:19.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:19.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:19.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:19.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:19.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:19.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:19.840][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:19.841][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:19.842][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:19.966][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:19.967][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:19.969][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:19.970][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:20.062][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:20.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-03-02 15:02:20.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-03-02 15:02:20.069][private$loadEntries] Creating entries from ids [3]: "170357083, 170345340, 170344836".
biodb.DEBUG[2024-03-02 15:02:20.070][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:20.071][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170357083, 170345340, 170344836".
biodb.TRACE[2024-03-02 15:02:20.072][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:20.073][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:20.074][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:20.075][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:20.075][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:20.076][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:20.077][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-03-02 15:02:20.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170357083,170345340,170344836/XML".
biodb.DEBUG[2024-03-02 15:02:20.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:20.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:20.082][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170357083,170345340,170344836/XML".
biodb.TRACE[2024-03-02 15:02:20.316][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170357083,170345340,170344836/XML).
biodb.TRACE[2024-03-02 15:02:20.647][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170357083.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170345340.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170344836.xml"
biodb.DEBUG[2024-03-02 15:02:20.649][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:20.650][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:20.651][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:20.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:20.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:20.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:20.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:20.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:20.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:20.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:20.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.664][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.668][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.669][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.670][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.675][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.675][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.681][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.682][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.687][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.688][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.694][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.700][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:20.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:20.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:20.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.706][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:20.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:20.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:20.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:20.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:20.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.721][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.726][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:20.726][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:20.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.729][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:20.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:20.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.732][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:20.733][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:20.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.734][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.739][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.739][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.745][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.746][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.747][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:20.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.790][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:20.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:20.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:20.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:20.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:20.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:20.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:20.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:20.844][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.854][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.855][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.856][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.861][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.861][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.863][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.867][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.868][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.870][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.874][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.875][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.881][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.881][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.887][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:20.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:20.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.890][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:20.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:20.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.894][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:20.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:20.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:20.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:20.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:20.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.913][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:20.914][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.920][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:20.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:20.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:20.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.927][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.928][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.933][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.934][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:20.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:20.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:20.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:20.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:20.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:20.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:20.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:20.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:20.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:21.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.029][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.030][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.036][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.037][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.043][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.043][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.049][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.050][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.056][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.057][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.063][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:21.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:21.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.070][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:21.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:21.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:21.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:21.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:21.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:21.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:21.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:21.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:21.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.090][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:21.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:21.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.119][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:21.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.127][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:21.128][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:21.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.134][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:21.135][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:21.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:21.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.151][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:21.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:21.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:21.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:21.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:21.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:21.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:21.243][self$createEntryFromContent] Accession numbers: 170357083, 170345340, 170344836.
biodb.DEBUG[2024-03-02 15:02:21.244][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:21.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.262][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.267][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.272][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.276][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170357083].
biodb.DEBUG[2024-03-02 15:02:21.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.305][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.314][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.316][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.320][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170345340].
biodb.DEBUG[2024-03-02 15:02:21.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.349][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.359][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.359][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.360][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.364][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170344836].
biodb.DEBUG[2024-03-02 15:02:21.382][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:21.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:21.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:21.400][biodb::testThat]
biodb.INFO [2024-03-02 15:02:21.401][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-03-02 15:02:21.402][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:21.403][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:21.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:21.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:21.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:21.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:21.455][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:21.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:21.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:21.458][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:21.459][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:21.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.476][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.481][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.483][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.485][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.486][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.489][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.490][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170429482].
biodb.DEBUG[2024-03-02 15:02:21.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.517][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.528][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.532][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170428354].
biodb.DEBUG[2024-03-02 15:02:21.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.559][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.564][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.569][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.571][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.572][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170412976].
biodb.DEBUG[2024-03-02 15:02:21.583][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:21.584][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:21.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:21.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:21.601][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:21.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-03-02 15:02:21.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:21.604][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-03-02 15:02:21.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:21.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.622][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.623][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.625][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.634][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.640][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.642][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.643][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:21.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.670][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.680][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.684][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170434730].
biodb.DEBUG[2024-03-02 15:02:21.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.710][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.719][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.720][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.724][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170421067].
biodb.DEBUG[2024-03-02 15:02:21.735][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:21.736][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:21.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:21.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:21.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:21.798][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:21.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-03-02 15:02:21.800][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:21.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-03-02 15:02:21.802][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:21.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.819][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.820][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.825][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.828][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.830][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.834][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:21.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.861][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.871][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.874][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170440362].
biodb.DEBUG[2024-03-02 15:02:21.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.908][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.918][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.921][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:21.933][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:21.933][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:21.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:21.948][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:21.950][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:21.951][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-03-02 15:02:21.952][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:21.953][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-03-02 15:02:21.955][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:21.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:21.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:21.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:21.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:21.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:21.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.970][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.971][private$selectFields]
biodb.TRACE[2024-03-02 15:02:21.972][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:21.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:21.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.981][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:21.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:21.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:21.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:21.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:21.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:21.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:22.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:22.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:22.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:22.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:22.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.010][private$selectFields]
biodb.TRACE[2024-03-02 15:02:22.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:22.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:22.012][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.013][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.015][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.019][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.020][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.023][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439181].
biodb.DEBUG[2024-03-02 15:02:22.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:22.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:22.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:22.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:22.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:22.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:22.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.050][private$selectFields]
biodb.TRACE[2024-03-02 15:02:22.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:22.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:22.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.060][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:22.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.063][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:22.074][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:22.075][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.102][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:22.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:22.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.107][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:22.108][biodb::testThat]
biodb.INFO [2024-03-02 15:02:22.109][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-03-02 15:02:22.110][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:22.111][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.116][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:22.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:22.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:22.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:22.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:22.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:22.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:22.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:22.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:22.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:22.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:22.167][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:22.168][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:22.169][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:22.243][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:22.244][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:22.245][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:22.246][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:22.340][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:22.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-03-02 15:02:22.345][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-03-02 15:02:22.346][private$loadEntries] Creating entries from ids [3]: "170457926, 170457903, 170456253".
biodb.DEBUG[2024-03-02 15:02:22.347][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:22.349][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170457926, 170457903, 170456253".
biodb.TRACE[2024-03-02 15:02:22.350][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:22.350][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:22.351][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:22.352][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:22.353][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:22.354][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:22.354][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-03-02 15:02:22.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457926,170457903,170456253/XML".
biodb.DEBUG[2024-03-02 15:02:22.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:22.358][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:22.359][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457926,170457903,170456253/XML".
biodb.TRACE[2024-03-02 15:02:22.514][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457926,170457903,170456253/XML).
biodb.TRACE[2024-03-02 15:02:22.801][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170457926.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170457903.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170456253.xml"
biodb.DEBUG[2024-03-02 15:02:22.803][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:22.804][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:22.805][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:22.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:22.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:22.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:22.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:22.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:22.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:22.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:22.817][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.819][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.823][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.824][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.825][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.830][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.830][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.836][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.837][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.839][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.843][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.844][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.849][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.850][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.856][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:22.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:22.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:22.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:22.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:22.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:22.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:22.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:22.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:22.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.882][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:22.882][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:22.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.888][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:22.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.890][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.894][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:22.895][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:22.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:22.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:22.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.900][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:22.901][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:22.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:22.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:22.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:22.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.924][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:22.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:22.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:22.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:22.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:22.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:22.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:22.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:22.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:22.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:22.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:22.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:22.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.002][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.003][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.009][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.010][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.015][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.016][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.022][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.029][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.030][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.035][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:23.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:23.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:23.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:23.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:23.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:23.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:23.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.062][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:23.063][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:23.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.066][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.069][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:23.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:23.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:23.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:23.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.076][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.077][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.082][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.083][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:23.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.126][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:23.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:23.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:23.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:23.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:23.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:23.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:23.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:23.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:23.171][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.178][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.179][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.185][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.186][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.192][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.193][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.199][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.199][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.205][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.206][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.212][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:23.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:23.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:23.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.219][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:23.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:23.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:23.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:23.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:23.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:23.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.245][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:23.246][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:23.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.248][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.252][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:23.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:23.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.259][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.260][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:23.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.265][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.266][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.268][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:23.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:23.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:23.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:23.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:23.376][self$createEntryFromContent] Accession numbers: 170457926, 170457903, 170456253.
biodb.DEBUG[2024-03-02 15:02:23.377][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:23.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:23.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:23.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:23.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:23.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:23.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:23.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:23.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.394][private$selectFields]
biodb.TRACE[2024-03-02 15:02:23.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:23.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:23.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.399][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.404][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.407][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.408][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457926].
biodb.DEBUG[2024-03-02 15:02:23.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:23.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:23.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:23.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:23.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:23.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:23.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.436][private$selectFields]
biodb.TRACE[2024-03-02 15:02:23.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:23.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:23.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:23.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457903].
biodb.DEBUG[2024-03-02 15:02:23.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:23.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:23.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:23.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:23.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:23.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:23.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.478][private$selectFields]
biodb.TRACE[2024-03-02 15:02:23.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:23.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:23.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.487][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.494][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:23.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.498][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.499][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:23.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:23.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170456253].
biodb.DEBUG[2024-03-02 15:02:23.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:23.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:23.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:23.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:23.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:23.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:23.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:23.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:23.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:23.527][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:23.529][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:23.530][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:23.531][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:23.608][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:23.608][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:23.610][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:23.611][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:23.751][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:23.753][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-03-02 15:02:23.757][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-03-02 15:02:23.758][private$loadEntries] Creating entries from ids [3]: "170457995, 170449880, 170449875".
biodb.DEBUG[2024-03-02 15:02:23.759][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:23.761][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170457995, 170449880, 170449875".
biodb.TRACE[2024-03-02 15:02:23.762][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:23.763][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:23.764][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:23.764][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:23.765][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:23.766][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:23.767][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-03-02 15:02:23.769][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457995,170449880,170449875/XML".
biodb.DEBUG[2024-03-02 15:02:23.770][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:23.771][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:23.772][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457995,170449880,170449875/XML".
biodb.TRACE[2024-03-02 15:02:23.918][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457995,170449880,170449875/XML).
biodb.TRACE[2024-03-02 15:02:24.186][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170457995.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170449880.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170449875.xml"
biodb.DEBUG[2024-03-02 15:02:24.188][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:24.189][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:24.190][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:24.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.202][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.208][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.209][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.215][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.216][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.222][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.222][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.224][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.228][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.229][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.236][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.241][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:24.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:24.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.248][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:24.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:24.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:24.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:24.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.257][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:24.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:24.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.267][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:24.268][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:24.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.274][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:24.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:24.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.280][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.281][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.287][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.287][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:24.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:24.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:24.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:24.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.385][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.388][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.392][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.393][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.395][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.399][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.400][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.402][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.406][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.407][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.413][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.414][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.415][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.420][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.421][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.426][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:24.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:24.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.429][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.430][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:24.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.433][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:24.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:24.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:24.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:24.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.443][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:24.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:24.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.454][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:24.454][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.460][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:24.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:24.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:24.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.467][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.468][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.474][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.475][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.477][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.481][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.500][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:24.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.572][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.572][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.578][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.579][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.581][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.585][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.586][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.591][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.592][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.598][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.598][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.604][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:24.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:24.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.608][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.611][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:24.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:24.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:24.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:24.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.619][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:24.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.637][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:24.637][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:24.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.643][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:24.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:24.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:24.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:24.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.649][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.650][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.652][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.656][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.659][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:24.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:24.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:24.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:24.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:24.763][self$createEntryFromContent] Accession numbers: 170457995, 170449880, 170449875.
biodb.DEBUG[2024-03-02 15:02:24.764][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:24.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.781][private$selectFields]
biodb.TRACE[2024-03-02 15:02:24.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:24.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:24.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.789][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.791][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.794][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.795][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457995].
biodb.DEBUG[2024-03-02 15:02:24.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.822][private$selectFields]
biodb.TRACE[2024-03-02 15:02:24.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:24.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:24.824][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.825][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.828][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.831][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.834][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.835][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449880].
biodb.DEBUG[2024-03-02 15:02:24.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.862][private$selectFields]
biodb.TRACE[2024-03-02 15:02:24.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:24.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:24.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.878][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.882][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449875].
biodb.DEBUG[2024-03-02 15:02:24.893][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:24.894][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:24.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:24.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:24.929][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:24.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:24.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:24.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:24.933][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:24.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.949][private$selectFields]
biodb.TRACE[2024-03-02 15:02:24.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:24.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:24.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.954][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.959][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.962][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.962][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170429482].
biodb.DEBUG[2024-03-02 15:02:24.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:24.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:24.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:24.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:24.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:24.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:24.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.989][private$selectFields]
biodb.TRACE[2024-03-02 15:02:24.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:24.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:24.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:24.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:24.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:24.999][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:24.999][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.003][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:25.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170428354].
biodb.DEBUG[2024-03-02 15:02:25.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:25.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.031][private$selectFields]
biodb.TRACE[2024-03-02 15:02:25.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:25.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:25.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.034][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.041][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.044][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:25.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170412976].
biodb.DEBUG[2024-03-02 15:02:25.056][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:25.056][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:25.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:25.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:25.073][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:25.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-03-02 15:02:25.075][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:25.076][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-03-02 15:02:25.078][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:25.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:25.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.095][private$selectFields]
biodb.TRACE[2024-03-02 15:02:25.095][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:25.096][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:25.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.098][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.104][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.108][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:25.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:25.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.142][private$selectFields]
biodb.TRACE[2024-03-02 15:02:25.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:25.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:25.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.150][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.151][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.154][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.155][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170434730].
biodb.DEBUG[2024-03-02 15:02:25.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.182][private$selectFields]
biodb.TRACE[2024-03-02 15:02:25.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:25.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:25.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.187][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.192][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:25.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.195][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:25.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170421067].
biodb.DEBUG[2024-03-02 15:02:25.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:25.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:25.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:25.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:25.241][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:25.242][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:25.243][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:25.319][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:25.320][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:25.321][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:25.322][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:25.420][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:25.422][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-03-02 15:02:25.425][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-03-02 15:02:25.427][private$loadEntries] Creating entries from ids [2]: "170457152, 170452549".
biodb.DEBUG[2024-03-02 15:02:25.428][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-03-02 15:02:25.429][cch$loadFileContent] Trying to load 2 files from cache: [2]: "170457152, 170452549".
biodb.TRACE[2024-03-02 15:02:25.430][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:25.431][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:25.432][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:25.433][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:25.434][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:25.435][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:25.436][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-03-02 15:02:25.437][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457152,170452549/XML".
biodb.DEBUG[2024-03-02 15:02:25.439][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:25.440][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:25.441][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457152,170452549/XML".
biodb.TRACE[2024-03-02 15:02:25.624][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170457152,170452549/XML).
biodb.TRACE[2024-03-02 15:02:25.834][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170457152.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170452549.xml"
biodb.DEBUG[2024-03-02 15:02:25.835][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:25.836][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-03-02 15:02:25.837][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:25.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:25.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:25.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:25.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:25.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:25.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:25.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:25.848][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:25.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:25.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.854][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.855][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.861][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.862][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.863][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.867][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.868][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.873][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.874][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.875][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.879][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.880][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.886][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:25.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:25.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.892][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:25.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:25.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:25.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:25.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:25.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:25.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:25.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:25.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.911][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:25.912][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:25.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.914][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.914][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:25.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.921][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:25.921][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:25.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.923][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:25.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.927][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:25.928][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:25.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:25.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.943][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:25.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:25.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:26.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:26.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:26.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:26.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:26.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:26.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:26.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:26.024][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.031][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.032][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.037][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.038][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.044][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.045][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.050][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.051][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.057][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.058][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.063][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:26.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:26.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:26.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:26.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:26.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:26.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:26.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.088][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:26.089][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:26.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.095][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:26.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:26.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.097][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.101][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:26.102][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:26.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:26.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:26.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.107][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:26.108][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:26.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.109][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:26.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.113][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:26.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.122][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:26.209][self$createEntryFromContent] Accession numbers: 170457152, 170452549.
biodb.DEBUG[2024-03-02 15:02:26.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:26.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:26.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:26.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:26.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:26.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:26.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:26.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.227][private$selectFields]
biodb.TRACE[2024-03-02 15:02:26.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:26.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:26.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.237][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.241][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:26.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457152].
biodb.DEBUG[2024-03-02 15:02:26.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:26.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:26.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:26.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:26.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:26.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:26.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.268][private$selectFields]
biodb.TRACE[2024-03-02 15:02:26.269][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:26.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:26.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.274][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.277][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.279][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.283][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170452549].
biodb.DEBUG[2024-03-02 15:02:26.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:26.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:26.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:26.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:26.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:26.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:26.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.310][private$selectFields]
biodb.TRACE[2024-03-02 15:02:26.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:26.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:26.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.316][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.319][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.320][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:26.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.324][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:26.335][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:26.336][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:26.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:26.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:26.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:26.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:26.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:26.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:26.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:26.350][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:26.353][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:26.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:26.355][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:26.430][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:26.431][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:26.432][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:26.434][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:26.543][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:26.545][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-03-02 15:02:26.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-03-02 15:02:26.549][private$loadEntries] Creating entries from ids [3]: "170451286, 170450444, 170450284".
biodb.DEBUG[2024-03-02 15:02:26.550][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-02 15:02:26.551][cch$loadFileContent] Trying to load 3 files from cache: [3]: "170451286, 170450444, 170450284".
biodb.TRACE[2024-03-02 15:02:26.552][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-03-02 15:02:26.553][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 15:02:26.554][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:26.555][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:26.555][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-03-02 15:02:26.556][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-03-02 15:02:26.557][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-03-02 15:02:26.558][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170451286,170450444,170450284/XML".
biodb.DEBUG[2024-03-02 15:02:26.560][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:26.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:26.562][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170451286,170450444,170450284/XML".
biodb.TRACE[2024-03-02 15:02:26.752][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/170451286,170450444,170450284/XML).
biodb.TRACE[2024-03-02 15:02:26.967][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170451286.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170450444.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/170450284.xml"
biodb.DEBUG[2024-03-02 15:02:26.969][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-03-02 15:02:26.970][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-03-02 15:02:26.971][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-03-02 15:02:26.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:26.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:26.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:26.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:26.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:26.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:26.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:26.983][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.990][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.990][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.992][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.996][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.996][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:26.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.002][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.003][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.009][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.019][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.026][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.032][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:27.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:27.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:27.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:27.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:27.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:27.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.053][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.057][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:27.058][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:27.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:27.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.064][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:27.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:27.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.070][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.071][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.076][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.077][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.082][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.092][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:27.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:27.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.164][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.170][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.176][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.177][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.183][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.183][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.189][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.190][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.195][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.196][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.202][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:27.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:27.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:27.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:27.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:27.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:27.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.223][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.227][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:27.228][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:27.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.229][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.230][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:27.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.233][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:27.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:27.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.235][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.240][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.245][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.246][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.247][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:27.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.338][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.344][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.344][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.350][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.357][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.358][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.363][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.369][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.370][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.371][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.375][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:27.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:27.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-03-02 15:02:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.382][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:27.383][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:27.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.384][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:27.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:27.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:27.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:27.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.401][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:27.401][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:27.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.407][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:27.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:27.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-03-02 15:02:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.413][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.414][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.415][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.419][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.420][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-03-02 15:02:27.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-03-02 15:02:27.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-03-02 15:02:27.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-03-02 15:02:27.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-03-02 15:02:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:27.530][self$createEntryFromContent] Accession numbers: 170451286, 170450444, 170450284.
biodb.DEBUG[2024-03-02 15:02:27.531][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:27.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.548][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.554][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.555][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.557][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.558][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.559][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.560][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.561][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451286].
biodb.DEBUG[2024-03-02 15:02:27.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.588][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.596][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.598][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.601][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.601][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170450444].
biodb.DEBUG[2024-03-02 15:02:27.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.628][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.630][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.636][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.637][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.641][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170450284].
biodb.DEBUG[2024-03-02 15:02:27.652][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:27.652][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:27.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:27.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:27.686][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:27.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-03-02 15:02:27.688][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:27.689][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-03-02 15:02:27.691][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:27.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.708][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.713][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.717][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.721][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457926].
biodb.DEBUG[2024-03-02 15:02:27.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.755][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.763][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.764][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.767][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.768][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457903].
biodb.DEBUG[2024-03-02 15:02:27.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.796][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.796][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.805][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.809][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170456253].
biodb.DEBUG[2024-03-02 15:02:27.820][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:27.821][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:27.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:27.836][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:27.838][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:27.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-03-02 15:02:27.841][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:27.842][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-03-02 15:02:27.843][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:27.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.860][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.868][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.869][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.872][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.872][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457995].
biodb.DEBUG[2024-03-02 15:02:27.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.898][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.907][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.911][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449880].
biodb.DEBUG[2024-03-02 15:02:27.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.936][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.936][private$selectFields]
biodb.TRACE[2024-03-02 15:02:27.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:27.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:27.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.944][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.945][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:27.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.948][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.949][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:27.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449875].
biodb.DEBUG[2024-03-02 15:02:27.959][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:27.959][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:27.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:27.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:27.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:27.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:27.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:27.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:27.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:27.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:27.998][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:27.999][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:28.000][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:28.001][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:28.003][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:28.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.019][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.028][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.032][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170429482].
biodb.DEBUG[2024-03-02 15:02:28.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.057][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.066][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.069][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.070][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170428354].
biodb.DEBUG[2024-03-02 15:02:28.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.096][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.105][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.108][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170412976].
biodb.DEBUG[2024-03-02 15:02:28.118][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:28.119][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:28.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:28.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:28.135][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:28.136][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-03-02 15:02:28.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:28.138][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-03-02 15:02:28.140][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:28.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.154][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.155][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.157][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.160][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.164][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.166][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.167][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:28.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.193][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.202][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.202][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170434730].
biodb.DEBUG[2024-03-02 15:02:28.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.238][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.238][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.246][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.247][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.248][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.251][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170421067].
biodb.DEBUG[2024-03-02 15:02:28.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:28.262][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:28.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:28.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:28.293][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:28.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-03-02 15:02:28.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:28.296][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-03-02 15:02:28.298][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:28.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.314][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.324][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.327][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457152].
biodb.DEBUG[2024-03-02 15:02:28.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.354][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.356][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.359][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.363][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.367][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170452549].
biodb.DEBUG[2024-03-02 15:02:28.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.392][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.401][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.404][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.405][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:28.416][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:28.416][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:28.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:28.430][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:28.433][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:28.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-03-02 15:02:28.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:28.435][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-03-02 15:02:28.437][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:28.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.461][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.461][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.462][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.463][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.469][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.470][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.471][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.474][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.475][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451286].
biodb.DEBUG[2024-03-02 15:02:28.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.503][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.503][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.506][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.514][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.517][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170450444].
biodb.DEBUG[2024-03-02 15:02:28.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.544][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.548][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.553][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.558][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170450284].
biodb.DEBUG[2024-03-02 15:02:28.570][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:28.571][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:28.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:28.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:28.631][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:28.632][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:28.633][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:28.711][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:28.712][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:28.713][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:28.714][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:28.809][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:28.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-03-02 15:02:28.814][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-03-02 15:02:28.816][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:28.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.834][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.838][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.840][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.845][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.847][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.849][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457926].
biodb.DEBUG[2024-03-02 15:02:28.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.876][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.890][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.900][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.903][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457903].
biodb.DEBUG[2024-03-02 15:02:28.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.930][private$selectFields]
biodb.TRACE[2024-03-02 15:02:28.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:28.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:28.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.940][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:28.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.941][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.943][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.944][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:28.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:28.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457152].
biodb.DEBUG[2024-03-02 15:02:28.955][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:28.955][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:28.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:28.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:28.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:28.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:28.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:28.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:28.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:28.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:28.973][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:28.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:28.975][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:29.050][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:29.051][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:29.052][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:29.054][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:29.147][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:29.149][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-03-02 15:02:29.152][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-03-02 15:02:29.154][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:29.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.171][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.173][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.181][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.185][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457995].
biodb.DEBUG[2024-03-02 15:02:29.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.211][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.219][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.221][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.224][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.225][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.236][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:29.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.252][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.266][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.277][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439181].
biodb.DEBUG[2024-03-02 15:02:29.277][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:29.278][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:29.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:29.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:29.322][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:29.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-03-02 15:02:29.324][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:29.325][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-03-02 15:02:29.326][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:29.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.344][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.346][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.349][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.353][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.357][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.357][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:29.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.384][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.394][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.398][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.409][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170440362].
biodb.DEBUG[2024-03-02 15:02:29.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.426][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.426][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.431][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.434][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.435][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.439][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:29.450][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:29.451][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:29.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:29.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:29.469][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:29.470][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-03-02 15:02:29.471][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:29.472][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-03-02 15:02:29.474][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:29.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.490][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.491][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.500][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.501][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.504][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:29.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.532][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.534][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.537][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.542][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.545][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439181].
biodb.DEBUG[2024-03-02 15:02:29.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.580][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.585][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.589][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.589][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.592][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.593][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:29.605][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:29.606][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:29.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:29.639][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:29.642][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:29.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:29.644][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:29.719][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:29.720][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:29.722][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:29.723][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:29.821][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:29.823][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-03-02 15:02:29.826][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-03-02 15:02:29.828][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:29.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.845][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.853][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.855][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.859][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.869][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:29.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.885][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.886][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.887][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.888][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.895][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.899][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170440362].
biodb.DEBUG[2024-03-02 15:02:29.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.926][private$selectFields]
biodb.TRACE[2024-03-02 15:02:29.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:29.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:29.928][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.935][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.936][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:29.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.940][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:29.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:29.951][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:29.952][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:29.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:29.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:29.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:29.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:29.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:29.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:29.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:29.967][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:29.970][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-03-02 15:02:29.970][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-03-02 15:02:29.972][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-03-02 15:02:30.057][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-03-02 15:02:30.057][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-03-02 15:02:30.059][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-03-02 15:02:30.060][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-03-02 15:02:30.158][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-03-02 15:02:30.160][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-03-02 15:02:30.163][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-03-02 15:02:30.165][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:30.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.192][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.202][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.205][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451286].
biodb.DEBUG[2024-03-02 15:02:30.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.234][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.237][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.244][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.245][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.248][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.248][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:30.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.277][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.279][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.286][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.287][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.291][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170450444].
biodb.DEBUG[2024-03-02 15:02:30.303][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:30.303][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:30.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:30.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:30.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:30.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-03-02 15:02:30.341][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:30.342][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-03-02 15:02:30.343][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:30.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.360][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.374][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457926].
biodb.DEBUG[2024-03-02 15:02:30.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.401][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.410][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.414][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457903].
biodb.DEBUG[2024-03-02 15:02:30.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.449][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.452][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.453][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.456][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.458][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.460][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.463][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457152].
biodb.DEBUG[2024-03-02 15:02:30.475][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:30.476][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:30.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:30.492][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:30.494][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:30.495][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-03-02 15:02:30.496][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:30.497][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-03-02 15:02:30.499][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:30.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.516][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.518][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.526][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.530][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170457995].
biodb.DEBUG[2024-03-02 15:02:30.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.557][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.558][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.563][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.567][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.571][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:30.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.599][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.609][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.612][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.613][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439181].
biodb.DEBUG[2024-03-02 15:02:30.624][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:30.625][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:30.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:30.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:30.660][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:30.662][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-03-02 15:02:30.663][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:30.664][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-03-02 15:02:30.665][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:30.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.682][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.682][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.683][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.684][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.688][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.697][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.699][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.704][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:30.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.731][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.732][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.733][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.742][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.745][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.746][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170440362].
biodb.DEBUG[2024-03-02 15:02:30.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.773][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.774][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.775][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.779][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.782][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.784][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.787][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.788][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:30.799][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:30.799][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:30.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:30.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:30.818][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:30.819][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-03-02 15:02:30.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:30.821][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-03-02 15:02:30.822][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:30.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.839][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.839][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.848][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.849][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.853][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:30.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.881][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.890][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.891][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.895][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439181].
biodb.DEBUG[2024-03-02 15:02:30.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.924][private$selectFields]
biodb.TRACE[2024-03-02 15:02:30.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:30.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:30.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.931][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.932][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.934][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:30.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.938][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:30.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170438102].
biodb.DEBUG[2024-03-02 15:02:30.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:30.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:30.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:30.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:30.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:30.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:30.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:30.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:30.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:30.992][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:30.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-03-02 15:02:30.994][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:30.995][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-03-02 15:02:30.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:30.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:30.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.015][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.020][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.029][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170449100].
biodb.DEBUG[2024-03-02 15:02:31.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.057][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.068][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.072][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:31.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170440362].
biodb.DEBUG[2024-03-02 15:02:31.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.100][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.109][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.112][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.113][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170439156].
biodb.DEBUG[2024-03-02 15:02:31.125][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:31.125][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:31.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:31.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:31.143][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:31.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-03-02 15:02:31.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:31.146][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-03-02 15:02:31.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:31.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.165][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.168][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.176][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.180][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:31.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.190][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451286].
biodb.DEBUG[2024-03-02 15:02:31.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.212][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.213][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.219][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.224][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.227][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.228][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170451225].
biodb.DEBUG[2024-03-02 15:02:31.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.257][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.262][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.265][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.266][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.267][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-03-02 15:02:31.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.271][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-03-02 15:02:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [170450444].
biodb.DEBUG[2024-03-02 15:02:31.283][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:31.283][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:31.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:31.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:31.310][biodb::testThat]
biodb.INFO [2024-03-02 15:02:31.311][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-03-02 15:02:31.312][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:31.313][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:31.315][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:31.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 15:02:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 15:02:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:31.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:31.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:31.365][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:31.366][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:31.367][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:31.368][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:31.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:31.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.441][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.490][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:31.491][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.493][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:31.494][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.497][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.498][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.500][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.500][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.501][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.503][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.504][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.504][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.507][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.508][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.510][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.511][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.513][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.516][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.522][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.523][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.524][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.525][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.527][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.531][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.533][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.537][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.538][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.540][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.541][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.547][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.547][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.550][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.551][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.552][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.553][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.554][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.556][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.557][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.559][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.559][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.560][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.562][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.562][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.565][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.571][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.572][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.573][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.581][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.581][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.587][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.588][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.590][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.591][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.592][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.594][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:31.595][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:31.596][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.598][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.599][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.600][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.601][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.605][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.606][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.608][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.609][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.611][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.611][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.612][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.614][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.614][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.624][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.625][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.629][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.639][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.640][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.641][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.642][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.643][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.645][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170429482, spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]-1-carboxamide, 1-spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]carboxamide, spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]-1-carboxamide, spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]-1-carboxamide, ...].
biodb.DEBUG[2024-03-02 15:02:31.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:31.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:31.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:31.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:31.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:31.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:31.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:31.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.881][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.920][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:31.921][private$selectFields]
biodb.TRACE[2024-03-02 15:02:31.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:31.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:31.923][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:31.924][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.926][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.927][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.928][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.929][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.930][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.930][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.932][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.933][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.933][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.936][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.936][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.939][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.939][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:31.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:31.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.954][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:31.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.958][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:31.959][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:31.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:31.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.963][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:31.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.967][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:31.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:31.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:31.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.972][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.973][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.974][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.976][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.977][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:31.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.978][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.979][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:31.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:31.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.981][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.982][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.983][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:31.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.985][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.986][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:31.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.987][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.988][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.989][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:31.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.990][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.991][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.992][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:31.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.994][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.995][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:31.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:31.997][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:31.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:31.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:31.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.001][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.006][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.006][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.014][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.014][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.020][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.021][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.021][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.023][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.024][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.025][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.027][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.028][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.028][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.032][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.032][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.035][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.036][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.038][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.039][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.041][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.042][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.044][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.045][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.047][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.056][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.057][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.059][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.062][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.065][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.066][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.071][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.072][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.074][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.075][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.077][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170428354, 4-amino-5-(oxetan-2-ylmethylamino)pyridine-2-carbonitrile, 4-amino-5-(2-oxetanylmethylamino)-2-pyridinecarbonitrile, 4-amino-5-(oxetan-2-ylmethylamino)pyridine-2-carbonitrile, 4-azanyl-5-(oxetan-2-ylmethylamino)pyridine-2-carbonitrile, ...].
biodb.DEBUG[2024-03-02 15:02:32.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:32.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:32.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:32.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:32.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:32.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:32.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.349][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.349][private$selectFields]
biodb.TRACE[2024-03-02 15:02:32.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:32.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:32.352][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.352][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.355][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.356][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.357][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.358][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.359][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.361][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.362][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.363][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.367][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.369][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.376][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.379][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.380][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.382][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.385][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.388][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.394][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.395][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.398][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.400][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.403][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.404][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.406][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.407][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.408][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.409][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.415][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.418][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.419][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.422][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.423][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.424][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.425][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.434][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.435][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.440][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.443][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.444][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.446][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.450][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.451][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.452][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.453][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.454][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.457][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.457][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.458][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.461][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.462][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.464][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.465][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.467][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.468][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.469][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.470][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.471][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.473][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.474][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.476][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.481][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.484][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.485][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.486][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.490][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.493][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.494][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.500][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.501][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.503][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.503][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.504][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.506][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.668][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170412976, 2,3,3-trimethylbutyl 2-methylphosphanylacetate, 2-methylphosphinoacetic acid 2,3,3-trimethylbutyl ester, 2,3,3-trimethylbutyl 2-methylphosphanylacetate, 2,3,3-trimethylbutyl 2-methylphosphanylethanoate, ...].
biodb.DEBUG[2024-03-02 15:02:32.669][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:32.669][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:32.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:32.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:32.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:32.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:32.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:32.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:32.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:32.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:32.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:32.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-03-02 15:02:32.690][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:32.691][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-03-02 15:02:32.693][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:32.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:32.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:32.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:32.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:32.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:32.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:32.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.799][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.799][private$selectFields]
biodb.TRACE[2024-03-02 15:02:32.800][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:32.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:32.802][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.804][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.805][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.806][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.807][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.808][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.809][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.810][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.811][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.812][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.814][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.816][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.817][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.817][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.819][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.828][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.829][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.831][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.837][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.839][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.843][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.844][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.846][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.847][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.853][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.854][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.855][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.856][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.858][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.859][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.860][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.861][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.862][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.863][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.867][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.869][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.872][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.875][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.881][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.882][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.885][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.891][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.892][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.898][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.899][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.901][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.902][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.904][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.905][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.905][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:32.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.909][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.910][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.912][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.913][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.913][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.915][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.916][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.916][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.919][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.920][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.921][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.922][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.922][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:32.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.924][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:32.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:32.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:32.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.930][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.931][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:32.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.933][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.934][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:32.935][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.937][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:32.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:32.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:32.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:32.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:32.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.948][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.948][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.949][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.951][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.952][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:32.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.953][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.954][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:32.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:32.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:32.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170438102, 3-(6-amino-2,3-difluoro-phenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-[6-azanyl-2,3-bis(fluoranyl)phenyl]prop-2-ynylcarbamic acid, ...].
biodb.DEBUG[2024-03-02 15:02:33.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:33.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:33.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:33.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:33.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:33.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:33.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:33.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.222][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.223][private$selectFields]
biodb.TRACE[2024-03-02 15:02:33.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:33.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:33.225][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.229][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.229][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.232][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.233][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.235][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.236][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.238][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.239][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.241][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.242][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.244][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.246][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.253][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.253][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.255][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.262][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.264][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.267][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.268][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.269][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.271][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.272][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.273][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.274][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.277][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.278][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.279][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.280][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.281][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.283][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.284][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.285][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.286][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.287][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.288][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.289][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.289][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.291][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.292][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.294][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.297][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.301][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.302][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.303][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.304][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.305][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.306][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.310][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.312][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.316][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.317][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.318][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.319][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.320][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.321][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.322][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.323][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.324][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.326][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.327][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.328][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.330][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.330][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.332][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.333][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.336][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.338][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.345][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.348][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.354][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.357][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.357][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.358][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.360][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.366][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.368][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.371][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.372][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.374][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.375][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.376][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.377][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.378][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.460][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170434730, methyl 6,7-difluoro-3-methyl-benzimidazole-5-carboxylate, 6,7-difluoro-3-methyl-5-benzimidazolecarboxylic acid methyl ester, methyl 6,7-difluoro-3-methylbenzimidazole-5-carboxylate, methyl 6,7-bis(fluoranyl)-3-methyl-benzimidazole-5-carboxylate, ...].
biodb.DEBUG[2024-03-02 15:02:33.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:33.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:33.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:33.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:33.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:33.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:33.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.643][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.644][private$selectFields]
biodb.TRACE[2024-03-02 15:02:33.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:33.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:33.646][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.647][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.650][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.651][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.652][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.654][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.655][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.656][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.657][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.658][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.659][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.660][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.662][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.662][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.663][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.665][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.671][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.675][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.676][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.680][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.683][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.684][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.686][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.689][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.690][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.691][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.692][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.693][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.694][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.699][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.700][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.702][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.703][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.705][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.705][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.707][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.708][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.709][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.710][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.711][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.712][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.713][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.714][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.719][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.722][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.723][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.724][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.726][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.732][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.738][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.739][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.741][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.742][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.743][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.744][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.745][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:33.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.748][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.749][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.751][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.752][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.754][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.755][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.757][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.758][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.760][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.761][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.762][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.763][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.765][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.769][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.772][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.773][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.782][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.784][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.787][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.788][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.789][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.790][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.791][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.792][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:33.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:33.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:33.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:33.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:33.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170421067, (2S)-2-amino-4-oxo-4-[(2-oxo-1H-pyrimidin-6-yl)amino]butanoic acid, (2S)-2-amino-4-oxo-4-[(2-oxo-1H-pyrimidin-6-yl)amino]butanoic acid, (2S)-2-amino-4-oxo-4-[(2-oxo-1H-pyrimidin-6-yl)amino]butanoic acid, (2S)-2-azanyl-4-oxidanylidene-4-[(2-oxidanylidene-1H-pyrimidin-6-yl)amino]butanoic acid, ...].
biodb.DEBUG[2024-03-02 15:02:33.955][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:33.956][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:33.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:33.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:33.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:33.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:33.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:33.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:33.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:33.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:33.978][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:33.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-03-02 15:02:33.980][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:33.981][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-03-02 15:02:33.982][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:33.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:33.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:33.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:33.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:33.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:33.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:33.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.104][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.105][private$selectFields]
biodb.TRACE[2024-03-02 15:02:34.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:34.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:34.107][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.110][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.111][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.113][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.114][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.116][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.117][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.118][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.119][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.120][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.122][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.123][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.134][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.135][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.137][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.137][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.143][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.145][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.149][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.150][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.152][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.153][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.155][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.156][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.158][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.158][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.162][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.162][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.164][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.165][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.166][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.168][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.169][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.171][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.172][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.175][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.177][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.182][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.186][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.187][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.188][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.195][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.197][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.201][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.202][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.204][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.205][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.208][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.208][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.210][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.211][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.211][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.212][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.214][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.215][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.216][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.218][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.218][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.219][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.223][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.223][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.225][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.229][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.230][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.232][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.241][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.241][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.242][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.244][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.247][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.251][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.253][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.256][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.256][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.257][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.259][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.259][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.260][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.262][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.262][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170429482, spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]-1-carboxamide, 1-spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]carboxamide, spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]-1-carboxamide, spiro[pyrrolidine-3,4'-pyrrolo[1,2-b]pyrazole]-1-carboxamide, ...].
biodb.DEBUG[2024-03-02 15:02:34.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:34.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:34.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:34.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:34.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:34.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:34.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:34.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.567][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.568][private$selectFields]
biodb.TRACE[2024-03-02 15:02:34.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:34.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:34.570][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.574][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.574][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.575][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.577][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.578][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.581][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.582][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.584][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.585][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.586][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.587][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.588][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.590][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.592][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.595][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.598][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.599][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.600][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.601][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.602][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.608][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.610][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.614][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.615][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.616][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.617][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.619][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.620][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.621][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.622][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.625][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.627][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.629][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.630][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.632][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.633][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.636][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.638][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.639][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.641][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.644][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.647][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.650][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.651][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.651][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.654][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.659][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.660][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.667][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.668][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.670][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.671][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.672][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.673][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.674][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.675][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:34.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.677][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.678][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:34.679][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.682][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.683][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.685][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.686][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.687][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.691][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.692][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.697][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.700][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.707][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.710][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.711][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.713][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.717][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.724][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.725][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.727][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.727][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.728][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.730][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.731][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170428354, 4-amino-5-(oxetan-2-ylmethylamino)pyridine-2-carbonitrile, 4-amino-5-(2-oxetanylmethylamino)-2-pyridinecarbonitrile, 4-amino-5-(oxetan-2-ylmethylamino)pyridine-2-carbonitrile, 4-azanyl-5-(oxetan-2-ylmethylamino)pyridine-2-carbonitrile, ...].
biodb.DEBUG[2024-03-02 15:02:34.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:34.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:34.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:34.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:34.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:34.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:34.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:34.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:34.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:34.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.023][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.023][private$selectFields]
biodb.TRACE[2024-03-02 15:02:35.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:35.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:35.026][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.026][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.030][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.031][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.033][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.034][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.036][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.037][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.039][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.039][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.040][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.043][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.045][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.055][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.056][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.059][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.065][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.071][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.072][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.074][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.075][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.077][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.078][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.083][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.083][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.084][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.086][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.086][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.087][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.089][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.089][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.090][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.092][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.092][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.093][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.095][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.096][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.096][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.098][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.108][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.109][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.117][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.123][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.124][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.124][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.127][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.128][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.129][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.130][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.131][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.135][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.135][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.139][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.140][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.142][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.142][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.143][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.145][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.146][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.147][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.149][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.150][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.151][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.152][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.153][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.155][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.158][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.164][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.165][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.166][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.168][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.174][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.176][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.179][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.180][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.181][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.182][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.183][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.184][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.186][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170412976, 2,3,3-trimethylbutyl 2-methylphosphanylacetate, 2-methylphosphinoacetic acid 2,3,3-trimethylbutyl ester, 2,3,3-trimethylbutyl 2-methylphosphanylacetate, 2,3,3-trimethylbutyl 2-methylphosphanylethanoate, ...].
biodb.DEBUG[2024-03-02 15:02:35.355][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:35.356][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:35.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:35.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:35.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:35.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:35.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:35.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:35.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:35.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:35.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:35.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-03-02 15:02:35.377][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:35.378][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-03-02 15:02:35.379][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:35.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:35.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:35.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:35.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:35.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:35.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:35.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.501][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.502][private$selectFields]
biodb.TRACE[2024-03-02 15:02:35.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:35.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:35.504][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.508][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.509][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.510][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.511][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.512][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.514][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.515][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.518][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.519][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.520][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.521][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.522][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.523][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.524][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.529][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.533][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.533][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.534][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.536][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.549][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.552][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.553][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.555][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.556][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.559][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.562][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.562][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.564][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.565][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.565][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.568][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.569][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.571][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.572][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.573][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.574][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.575][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.576][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.582][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.585][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.586][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.587][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.589][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.595][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.597][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.600][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.601][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.604][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.607][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.608][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.610][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.611][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.612][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.612][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.615][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.615][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.616][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.618][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.618][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.619][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.621][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.621][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.622][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.624][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.625][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.627][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.628][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.628][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.630][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.639][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.640][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.642][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.648][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.648][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.651][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.655][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.655][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.657][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.658][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.658][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.661][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:35.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.754][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170438102, 3-(6-amino-2,3-difluoro-phenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-[6-azanyl-2,3-bis(fluoranyl)phenyl]prop-2-ynylcarbamic acid, ...].
biodb.DEBUG[2024-03-02 15:02:35.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:35.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:35.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:35.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:35.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:35.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:35.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.893][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.938][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.938][private$selectFields]
biodb.TRACE[2024-03-02 15:02:35.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:35.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:35.940][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:35.941][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:35.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:35.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.943][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.944][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.945][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:35.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.947][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.948][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:35.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.949][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.950][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.951][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.953][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.954][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:35.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.956][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.957][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:35.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.958][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.959][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:35.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:35.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:35.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.975][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:35.976][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:35.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:35.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:35.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.984][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:35.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:35.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.986][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:35.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.990][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.991][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:35.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.992][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.993][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.994][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:35.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.996][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.997][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:35.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:35.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:35.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.002][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.003][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.005][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.006][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.007][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.009][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.011][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.012][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.014][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.015][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.017][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.019][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.020][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.026][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.027][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.035][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.038][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.041][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.042][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.044][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.045][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.045][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.048][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.049][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.051][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.052][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.052][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.055][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.056][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.056][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.058][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.061][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.062][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.064][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.064][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.065][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.067][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.068][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.070][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.079][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.080][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.088][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.095][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.097][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.098][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.100][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.185][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170434730, methyl 6,7-difluoro-3-methyl-benzimidazole-5-carboxylate, 6,7-difluoro-3-methyl-5-benzimidazolecarboxylic acid methyl ester, methyl 6,7-difluoro-3-methylbenzimidazole-5-carboxylate, methyl 6,7-bis(fluoranyl)-3-methyl-benzimidazole-5-carboxylate, ...].
biodb.DEBUG[2024-03-02 15:02:36.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:36.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:36.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:36.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:36.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:36.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:36.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.386][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.387][private$selectFields]
biodb.TRACE[2024-03-02 15:02:36.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:36.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:36.389][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.389][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.392][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.392][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.393][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.395][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.395][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.396][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.398][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.399][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.401][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.402][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.404][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.405][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.415][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.416][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.416][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.418][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.421][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.424][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.430][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.431][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.433][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.440][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.442][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.443][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.444][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.446][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.447][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.449][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.450][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.450][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.452][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.453][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.454][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.456][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.457][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.458][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.459][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.460][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.462][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.463][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.464][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.465][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.467][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.468][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.474][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.475][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.476][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.477][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.488][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.489][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.490][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.492][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.493][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.495][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.496][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.496][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:36.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.498][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.499][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.500][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.503][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.503][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.504][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.506][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.507][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.507][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.510][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.511][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.513][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.514][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.528][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.529][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.529][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.532][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.537][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.538][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.543][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.544][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.547][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.547][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.550][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:36.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.639][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170421067, (2S)-2-amino-4-oxo-4-[(2-oxo-1H-pyrimidin-6-yl)amino]butanoic acid, (2S)-2-amino-4-oxo-4-[(2-oxo-1H-pyrimidin-6-yl)amino]butanoic acid, (2S)-2-amino-4-oxo-4-[(2-oxo-1H-pyrimidin-6-yl)amino]butanoic acid, (2S)-2-azanyl-4-oxidanylidene-4-[(2-oxidanylidene-1H-pyrimidin-6-yl)amino]butanoic acid, ...].
biodb.DEBUG[2024-03-02 15:02:36.718][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:36.718][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:36.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:36.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:36.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:36.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:36.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:36.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:36.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:36.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:36.766][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:36.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-03-02 15:02:36.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:36.769][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-03-02 15:02:36.771][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:36.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:36.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:36.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:36.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:36.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:36.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:36.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.880][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.880][private$selectFields]
biodb.TRACE[2024-03-02 15:02:36.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:36.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:36.883][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.883][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.889][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.890][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.893][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.893][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.896][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.897][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.898][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.899][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.899][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.902][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.904][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.905][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.907][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.917][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.918][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.920][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.921][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.923][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.927][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.930][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.931][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.933][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.934][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.934][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.937][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.938][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.939][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.940][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.944][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.946][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.947][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.949][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.950][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.950][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:36.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.953][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.954][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:36.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.955][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.956][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.957][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.958][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.959][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:36.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:36.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:36.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:36.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.965][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:36.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.968][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.968][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:36.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:36.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:36.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.978][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:36.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:36.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:36.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.984][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.984][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:36.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.986][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.987][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.988][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:36.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.990][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.991][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:36.992][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:36.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:36.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.995][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.996][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:36.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:36.997][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:36.998][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:36.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.001][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.002][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.003][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.004][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.005][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.007][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.008][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.010][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.015][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.019][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.020][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.029][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.034][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.035][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.038][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.038][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.041][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.131][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170449100, 1-[(1S,2S)-2-(benzyloxymethyl)cyclopropyl]ethanone, 1-[(1S,2S)-2-(phenylmethoxymethyl)cyclopropyl]ethanone, 1-[(1S,2S)-2-(phenylmethoxymethyl)cyclopropyl]ethanone, 1-[(1S,2S)-2-(phenylmethoxymethyl)cyclopropyl]ethanone, ...].
biodb.DEBUG[2024-03-02 15:02:37.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:37.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:37.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:37.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:37.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:37.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:37.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.316][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.317][private$selectFields]
biodb.TRACE[2024-03-02 15:02:37.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:37.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:37.319][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.320][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.323][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.324][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.325][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.326][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.327][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.328][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.329][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.330][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.331][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.332][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.333][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.335][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.335][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.336][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.339][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.344][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.348][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.349][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.351][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.353][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.356][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.357][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.363][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.364][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.366][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.367][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.369][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.373][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.374][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.375][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.376][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.377][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.379][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.380][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.381][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.382][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.383][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.385][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.385][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.395][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.398][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.401][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.405][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.405][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.406][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.408][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.411][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.415][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.420][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.424][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.428][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.428][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.429][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.432][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.433][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.435][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.436][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.439][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.439][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.442][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.443][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.445][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.446][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.450][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.453][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.457][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.457][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.458][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.460][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.460][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.463][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.466][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.469][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.473][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.473][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.476][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.477][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.479][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.566][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170440362, 2,5-dimethoxy-2-methyl-1H-naphthalene, 2,5-dimethoxy-2-methyl-1H-naphthalene, 2,5-dimethoxy-2-methyl-1H-naphthalene, 2,5-dimethoxy-2-methyl-1H-naphthalene, ...].
biodb.DEBUG[2024-03-02 15:02:37.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:37.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:37.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:37.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:37.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:37.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:37.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.759][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.760][private$selectFields]
biodb.TRACE[2024-03-02 15:02:37.761][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:37.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:37.763][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.763][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.767][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.767][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.769][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.770][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.771][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.776][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.777][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.779][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.780][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.784][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.787][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.790][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.791][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.794][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.804][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.805][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.806][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.807][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.809][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.810][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.812][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.815][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.816][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.818][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.819][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.821][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.822][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.823][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.824][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.825][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.827][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.830][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.838][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.839][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.849][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.851][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.854][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.855][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.855][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.857][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.858][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.859][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.860][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.861][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.862][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:37.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.871][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.872][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.875][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.876][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.879][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.879][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.882][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.883][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.884][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.885][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.886][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.888][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.890][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.897][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:37.898][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:37.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:37.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.903][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:37.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:37.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:37.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.908][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.910][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:37.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.912][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.913][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:37.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.914][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.915][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.916][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.918][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:37.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170439156, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, ...].
biodb.DEBUG[2024-03-02 15:02:38.075][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:38.076][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:38.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:38.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:38.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:38.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:38.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:38.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:38.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:38.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:38.094][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:38.095][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-03-02 15:02:38.096][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:38.097][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-03-02 15:02:38.099][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:38.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:38.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:38.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:38.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:38.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:38.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:38.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.216][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.217][private$selectFields]
biodb.TRACE[2024-03-02 15:02:38.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:38.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:38.219][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.220][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.223][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.224][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.225][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.226][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.227][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.228][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.229][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.230][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.232][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.233][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.234][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.236][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.237][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.243][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.246][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.246][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.247][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.249][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.250][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.255][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.260][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.262][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.264][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.265][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.266][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.267][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.270][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.273][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.274][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.275][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.276][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.277][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.278][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.279][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.280][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.281][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.282][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.283][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.284][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.285][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.287][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.290][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.293][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.293][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.294][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.296][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.296][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.302][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.305][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.309][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.310][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.311][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.312][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.313][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.314][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.315][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.316][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.318][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.319][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.321][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.321][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.322][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.324][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.324][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.325][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.327][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.327][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.328][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.330][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.331][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.339][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.340][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.347][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.349][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.350][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.350][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.353][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.358][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.366][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.370][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.371][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170451225, 8-amino-7-chloro-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, 8-amino-7-chloro-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, 8-amino-7-chloro-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, 8-azanyl-7-chloranyl-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, ...].
biodb.DEBUG[2024-03-02 15:02:38.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:38.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:38.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:38.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:38.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:38.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:38.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.644][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.644][private$selectFields]
biodb.TRACE[2024-03-02 15:02:38.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:38.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:38.647][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.647][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.650][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.650][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.651][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.654][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.657][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.658][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.659][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.662][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.664][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.675][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.676][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.684][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.687][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.690][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.691][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.694][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.694][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.696][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.699][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.700][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.702][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.703][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.705][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.705][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.709][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.709][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.711][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.712][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.712][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.714][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.714][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.720][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.723][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.724][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.726][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.733][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.735][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.738][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.739][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.739][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.741][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.741][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.742][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.744][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.744][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.745][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:38.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.748][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.750][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.751][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.752][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.753][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.755][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.756][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.757][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.758][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.759][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.761][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.762][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.763][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.769][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.773][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.774][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.775][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.781][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.782][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.784][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.787][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.787][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.788][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.790][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.790][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.791][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.793][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.889][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:38.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:38.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:38.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:38.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170439181, 1-chloroethyl 4-chloro-2,2-dimethyl-pentanoate, 4-chloro-2,2-dimethylpentanoic acid 1-chloroethyl ester, 1-chloroethyl 4-chloro-2,2-dimethylpentanoate, 1-chloroethyl 4-chloranyl-2,2-dimethyl-pentanoate, ...].
biodb.DEBUG[2024-03-02 15:02:38.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:38.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:38.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:38.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:38.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:38.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:38.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.072][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.073][private$selectFields]
biodb.TRACE[2024-03-02 15:02:39.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:39.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:39.075][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.076][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.078][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.079][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.080][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.081][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.085][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.085][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.087][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.088][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.090][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.091][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.093][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.102][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.103][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.104][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.107][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.111][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.113][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.117][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.118][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.120][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.123][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.126][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.127][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.129][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.130][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.131][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.132][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.133][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.134][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.135][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.137][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.138][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.139][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.140][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.141][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.143][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.146][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.149][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.150][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.151][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.153][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.155][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.158][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.158][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.164][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.164][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.165][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.167][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.168][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.169][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.170][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.171][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.174][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.175][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.175][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.177][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.178][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.181][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.183][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.185][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.186][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.187][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.188][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.189][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.190][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.192][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.198][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.198][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.204][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.206][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.207][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.209][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.212][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.214][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.215][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.216][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.217][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.218][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.219][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170438102, 3-(6-amino-2,3-difluoro-phenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-[6-azanyl-2,3-bis(fluoranyl)phenyl]prop-2-ynylcarbamic acid, ...].
biodb.DEBUG[2024-03-02 15:02:39.380][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:39.380][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:39.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:39.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:39.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:39.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:39.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:39.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:39.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:39.400][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:39.403][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:39.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-03-02 15:02:39.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:39.406][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-03-02 15:02:39.407][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:39.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:39.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:39.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:39.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:39.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:39.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:39.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.531][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.531][private$selectFields]
biodb.TRACE[2024-03-02 15:02:39.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:39.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:39.533][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.534][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.536][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.537][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.538][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.540][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.541][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.543][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.544][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.549][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.550][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.552][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.555][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.561][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.562][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.564][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.564][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.570][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.570][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.573][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.576][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.577][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.578][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.581][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.582][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.585][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.586][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.588][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.589][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.590][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.592][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.593][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.595][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.596][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.597][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.601][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.601][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.602][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.604][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.606][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.609][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.612][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.613][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.614][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.615][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.616][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.618][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.621][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.622][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.624][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.627][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.628][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.628][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.630][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.631][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.631][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.634][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.634][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.636][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.636][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.637][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.640][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.641][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.642][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.643][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.644][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.644][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.646][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.646][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.647][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.649][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.649][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.650][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.652][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.652][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.653][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.654][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.657][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.663][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.664][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.665][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.666][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.669][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.672][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.675][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.679][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.679][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.681][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.682][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.685][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.776][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.782][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170449100, 1-[(1S,2S)-2-(benzyloxymethyl)cyclopropyl]ethanone, 1-[(1S,2S)-2-(phenylmethoxymethyl)cyclopropyl]ethanone, 1-[(1S,2S)-2-(phenylmethoxymethyl)cyclopropyl]ethanone, 1-[(1S,2S)-2-(phenylmethoxymethyl)cyclopropyl]ethanone, ...].
biodb.DEBUG[2024-03-02 15:02:39.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:39.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:39.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:39.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:39.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:39.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:39.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.963][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.963][private$selectFields]
biodb.TRACE[2024-03-02 15:02:39.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:39.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:39.965][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:39.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:39.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:39.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.968][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.969][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.970][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:39.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.972][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.973][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:39.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.975][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.976][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:39.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.978][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.979][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:39.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.981][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.982][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:39.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.984][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:39.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:39.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.986][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:39.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:39.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:39.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.992][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.993][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:39.994][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:39.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.996][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:39.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:39.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:39.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.001][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.002][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.007][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.008][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.014][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.015][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.019][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.020][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.021][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.023][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.024][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.026][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.026][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.029][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.030][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.031][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.032][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.032][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.035][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.043][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.044][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.046][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.046][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.052][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.058][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.059][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.061][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.064][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.065][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.066][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.067][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.067][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.068][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.071][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.072][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.073][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.074][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.075][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.077][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.078][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.080][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.081][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.083][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.083][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.085][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.088][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.094][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.095][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.097][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.098][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.099][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.102][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.103][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.105][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.109][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.109][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.111][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.112][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.112][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.114][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.114][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170440362, 2,5-dimethoxy-2-methyl-1H-naphthalene, 2,5-dimethoxy-2-methyl-1H-naphthalene, 2,5-dimethoxy-2-methyl-1H-naphthalene, 2,5-dimethoxy-2-methyl-1H-naphthalene, ...].
biodb.DEBUG[2024-03-02 15:02:40.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:40.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:40.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:40.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:40.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:40.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:40.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.339][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.388][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.389][private$selectFields]
biodb.TRACE[2024-03-02 15:02:40.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:40.391][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:40.392][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.392][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.395][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.395][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.396][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.398][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.399][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.401][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.402][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.405][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.406][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.408][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.410][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.417][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.419][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.420][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.423][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.430][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.431][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.439][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.440][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.442][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.445][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.446][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.447][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.448][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.449][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.450][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.452][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.453][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.454][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.455][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.458][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.458][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.459][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.462][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.462][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.464][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.465][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.465][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.467][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.467][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.468][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.470][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.471][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.471][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.474][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.476][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.483][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.484][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.486][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.488][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.491][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.492][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.497][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.498][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.499][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.501][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.501][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.502][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.504][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.505][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.505][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.508][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.509][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.509][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.512][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.513][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.515][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.515][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.516][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.519][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.519][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.522][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.522][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.524][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.525][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.525][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.527][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.528][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.530][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.533][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.540][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.542][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.543][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.544][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.549][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.552][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.555][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.556][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.558][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.560][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.561][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.562][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170439156, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, 3-[2-(dimethylamino)ethyl]-1,7-dihydroindol-6-one, ...].
biodb.DEBUG[2024-03-02 15:02:40.733][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:40.734][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-03-02 15:02:40.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:40.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:40.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:40.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:40.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:40.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:40.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:40.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-03-02 15:02:40.753][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-02 15:02:40.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-03-02 15:02:40.755][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:40.756][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-03-02 15:02:40.757][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-02 15:02:40.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:40.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:40.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:40.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:40.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:40.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:40.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.874][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.874][private$selectFields]
biodb.TRACE[2024-03-02 15:02:40.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:40.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:40.877][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.880][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.881][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.882][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.884][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.885][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.887][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.888][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.890][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.893][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.894][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.902][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.903][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.909][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.913][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.914][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.917][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.923][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.928][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.929][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.930][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.932][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.933][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.935][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.936][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.941][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.942][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.942][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.945][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.945][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:40.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.947][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.948][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.949][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:40.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.951][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:40.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.953][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.954][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.955][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:40.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.957][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.957][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:40.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:40.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:40.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:40.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.963][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:40.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.966][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.967][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:40.968][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:40.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.970][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:40.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.972][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:40.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.976][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:40.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:40.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:40.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.982][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.982][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.983][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:40.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.986][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.986][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:40.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.989][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.990][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:40.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.991][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.992][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.993][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:40.994][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:40.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:40.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.996][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:40.997][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.998][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:40.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:40.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.000][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.001][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.003][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.006][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.007][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.009][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.010][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.013][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.015][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.018][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.021][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.022][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.023][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.025][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.027][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.030][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.031][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.033][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.037][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.038][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.040][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.040][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.041][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.043][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.131][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170451225, 8-amino-7-chloro-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, 8-amino-7-chloro-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, 8-amino-7-chloro-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, 8-azanyl-7-chloranyl-3,4-dihydro-1H-isoquinoline-2-carboxylic acid, ...].
biodb.DEBUG[2024-03-02 15:02:41.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:41.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:41.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:41.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:41.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:41.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:41.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.330][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.331][private$selectFields]
biodb.TRACE[2024-03-02 15:02:41.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:41.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:41.333][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.336][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.337][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.338][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.340][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.340][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.344][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.344][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.346][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.347][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.347][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.349][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.350][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.350][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.353][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.358][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.359][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.361][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.362][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.362][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.364][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.365][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.370][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.371][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.373][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.383][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.384][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.385][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.387][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.388][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.389][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.391][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.392][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.394][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.397][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.398][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.401][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.401][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.404][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.404][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.407][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.408][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.409][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.410][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.411][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.416][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.419][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.423][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.423][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.425][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.428][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.431][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.432][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.434][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.438][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.439][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.441][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.441][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.442][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.444][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.445][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.445][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.448][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.448][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.449][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.452][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.452][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.453][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.455][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.456][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.458][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.458][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.459][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.461][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.462][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.464][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.467][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.468][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.471][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.474][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.477][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.478][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.480][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.487][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.487][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.490][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.493][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.494][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.496][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.498][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.500][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.664][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170439181, 1-chloroethyl 4-chloro-2,2-dimethyl-pentanoate, 4-chloro-2,2-dimethylpentanoic acid 1-chloroethyl ester, 1-chloroethyl 4-chloro-2,2-dimethylpentanoate, 1-chloroethyl 4-chloranyl-2,2-dimethyl-pentanoate, ...].
biodb.DEBUG[2024-03-02 15:02:41.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:41.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:41.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:41.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:41.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:41.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:41.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.731][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.734][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.780][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.781][private$selectFields]
biodb.TRACE[2024-03-02 15:02:41.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-02 15:02:41.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-02 15:02:41.783][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.784][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.786][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.787][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.788][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.789][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.790][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.791][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.793][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.794][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.797][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.800][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.802][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.802][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.805][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.808][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.808][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.809][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.812][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.812][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.815][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.820][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.821][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.824][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.828][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.828][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.830][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.831][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.832][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.834][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.835][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.836][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.839][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.840][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.841][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.842][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.843][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.844][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.846][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.847][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.855][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.856][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.858][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.859][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.860][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.870][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.871][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.872][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.873][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.875][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.877][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.880][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.881][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.887][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.888][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.890][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-03-02 15:02:41.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.896][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.897][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-03-02 15:02:41.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.900][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.902][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.904][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.904][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.907][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.908][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.911][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.911][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.913][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.914][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.915][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.917][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:41.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:41.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.919][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:41.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:41.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:41.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.925][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.926][ef$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:41.927][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:41.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.928][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.929][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:41.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.935][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:41.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:41.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:41.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.940][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.941][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.942][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:41.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.944][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.944][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.945][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:41.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.947][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-03-02 15:02:41.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-03-02 15:02:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-03-02 15:02:41.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-03-02 15:02:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 15:02:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 15:02:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 15:02:42.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 15:02:42.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 15:02:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 15:02:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:42.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 15:02:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 15:02:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-03-02 15:02:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-03-02 15:02:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-02 15:02:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 15:02:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 15:02:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 15:02:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:42.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-03-02 15:02:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-03-02 15:02:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.111][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [170438102, 3-(6-amino-2,3-difluoro-phenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-(6-amino-2,3-difluorophenyl)prop-2-ynylcarbamic acid, 3-[6-azanyl-2,3-bis(fluoranyl)phenyl]prop-2-ynylcarbamic acid, ...].
biodb.DEBUG[2024-03-02 15:02:42.112][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-02 15:02:42.113][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-02 15:02:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:42.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:42.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-02 15:02:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:42.128][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 15:02:42.129][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-03-02 15:02:42.129][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-03-02 15:02:42.130][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 15:02:42.131][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.132][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.134][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-02 15:02:42.137][biodb::testContext]
biodb.INFO [2024-03-02 15:02:42.138][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:02:42.139][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-03-02 15:02:42.140][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 15:02:42.140][biodb::testContext]
biodb.INFO [2024-03-02 15:02:42.142][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:02:42.144][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 15:02:42.147][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:02:42.148][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 15:02:42.149][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 15:02:42.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.152][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 15:02:42.153][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 15:02:42.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.156][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 15:02:42.156][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 15:02:42.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.159][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 15:02:42.160][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 15:02:42.161][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 15:02:42.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.164][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 15:02:42.164][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 15:02:42.165][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 15:02:42.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.168][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 15:02:42.169][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 15:02:42.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.172][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 15:02:42.173][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 15:02:42.174][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 15:02:42.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.176][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 15:02:42.177][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 15:02:42.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.180][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 15:02:42.181][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 15:02:42.182][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 15:02:42.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.185][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:02:42.185][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 15:02:42.186][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 15:02:42.187][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 15:02:42.188][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 15:02:42.189][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 15:02:42.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.191][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 15:02:42.192][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 15:02:42.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.195][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 15:02:42.196][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 15:02:42.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.199][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 15:02:42.200][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 15:02:42.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.202][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 15:02:42.203][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 15:02:42.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.206][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 15:02:42.207][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 15:02:42.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.210][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 15:02:42.210][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 15:02:42.228][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 15:02:42.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.231][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 15:02:42.231][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 15:02:42.232][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 15:02:42.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.235][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 15:02:42.237][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.237][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 15:02:42.238][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.239][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.240][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.241][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.241][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.242][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.243][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:02:42.244][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.245][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.245][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 15:02:42.246][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.247][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.248][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.248][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:42.248][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:02:42.248][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:02:42.248][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:02:42.248][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:02:42.249][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:42.250][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.251][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.251][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.252][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.253][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.254][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.254][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.255][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.256][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.256][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.257][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.258][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 15:02:42.259][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.260][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:02:42.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.262][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.262][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.263][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.264][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.265][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.265][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:02:42.266][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.267][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.268][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 15:02:42.269][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.269][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.270][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.271][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:42.271][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:02:42.271][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:02:42.271][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 15:02:42.271][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 15:02:42.272][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:42.273][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.276][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.277][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.278][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.278][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.279][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.280][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.281][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 15:02:42.282][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.283][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 15:02:42.284][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.284][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.285][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.286][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.287][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.287][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.288][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 15:02:42.289][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.290][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.290][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 15:02:42.291][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.292][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.293][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.293][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.294][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:42.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.296][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.297][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.298][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.298][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.299][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.300][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.301][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.301][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.302][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.303][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 15:02:42.304][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.305][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 15:02:42.306][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.307][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.308][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.309][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.309][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.310][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.311][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 15:02:42.312][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.312][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.313][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 15:02:42.314][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.315][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.316][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.316][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.317][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 15:02:42.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.319][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.322][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.322][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.324][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.325][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.326][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:02:42.327][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.397][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 15:02:42.398][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 15:02:42.400][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 15:02:42.401][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 15:02:42.402][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 15:02:42.403][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 15:02:42.404][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 15:02:42.405][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 15:02:42.406][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 15:02:42.407][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 15:02:42.408][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 15:02:42.409][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 15:02:42.411][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 15:02:42.412][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 15:02:42.413][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:02:42.414][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:02:42.415][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 15:02:42.416][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 15:02:42.417][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 15:02:42.418][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 15:02:42.420][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 15:02:42.421][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 15:02:42.422][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 15:02:42.423][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 15:02:42.424][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 15:02:42.425][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 15:02:42.426][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 15:02:42.427][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 15:02:42.429][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 15:02:42.430][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 15:02:42.431][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 15:02:42.432][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 15:02:42.433][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 15:02:42.434][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 15:02:42.435][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 15:02:42.437][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 15:02:42.438][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 15:02:42.439][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 15:02:42.440][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 15:02:42.441][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 15:02:42.442][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 15:02:42.443][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 15:02:42.444][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 15:02:42.446][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 15:02:42.447][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 15:02:42.448][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:02:42.449][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 15:02:42.450][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 15:02:42.451][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 15:02:42.452][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 15:02:42.453][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 15:02:42.454][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 15:02:42.456][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 15:02:42.457][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 15:02:42.458][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 15:02:42.459][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 15:02:42.460][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 15:02:42.461][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 15:02:42.462][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 15:02:42.463][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 15:02:42.465][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 15:02:42.466][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 15:02:42.467][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 15:02:42.468][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 15:02:42.469][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 15:02:42.470][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 15:02:42.471][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 15:02:42.473][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 15:02:42.474][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 15:02:42.475][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 15:02:42.476][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 15:02:42.477][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 15:02:42.478][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 15:02:42.479][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 15:02:42.480][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 15:02:42.481][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 15:02:42.482][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 15:02:42.483][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 15:02:42.484][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 15:02:42.486][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 15:02:42.487][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 15:02:42.488][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 15:02:42.489][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 15:02:42.490][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 15:02:42.491][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-02 15:02:42.492][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 15:02:42.493][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.495][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 15:02:42.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 15:02:42.588][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-03-02 15:02:42.590][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-03-02 15:02:42.591][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.592][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-03-02 15:02:42.593][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.594][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.594][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.595][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.596][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.597][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.598][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-03-02 15:02:42.598][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.599][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.600][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-03-02 15:02:42.601][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.601][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-03-02 15:02:42.601][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-03-02 15:02:42.602][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.603][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.604][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:02:42.604][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.605][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.606][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.608][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.609][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-03-02 15:02:42.609][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-03-02 15:02:42.610][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.611][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.611][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.612][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.613][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-03-02 15:02:42.615][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.616][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-03-02 15:02:42.616][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.617][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.618][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.619][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.619][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.620][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.621][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:02:42.622][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.623][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.624][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-03-02 15:02:42.624][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.625][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-03-02 15:02:42.625][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-03-02 15:02:42.625][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-03-02 15:02:42.625][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-03-02 15:02:42.625][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-03-02 15:02:42.625][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-03-02 15:02:42.626][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.627][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:42.628][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 15:02:42.628][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.629][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.630][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.631][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.631][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.632][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.633][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:42.633][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:02:42.634][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.634][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.635][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.636][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.637][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-03-02 15:02:42.638][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.639][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-03-02 15:02:42.640][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.641][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.642][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.642][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.643][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.644][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.645][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:02:42.646][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.646][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.647][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-03-02 15:02:42.648][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-03-02 15:02:42.650][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.651][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 15:02:42.651][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 15:02:42.651][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 15:02:42.651][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:02:42.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.653][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.654][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.655][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.655][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.656][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.657][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:42.657][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:02:42.657][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:02:42.658][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.658][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.659][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.660][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:02:42.661][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-03-02 15:02:42.662][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.663][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-03-02 15:02:42.664][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.665][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 15:02:42.666][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.667][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.667][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.668][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.669][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 15:02:42.670][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 15:02:42.670][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.671][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-03-02 15:02:42.672][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 15:02:42.673][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-03-02 15:02:42.673][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-03-02 15:02:42.674][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 15:02:42.674][self$setPropertyValue]
biodb.DEBUG[2024-03-02 15:02:42.675][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-03-02 15:02:42.676][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.677][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.678][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 15:02:42.678][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 15:02:42.679][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 15:02:42.680][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 15:02:42.681][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-03-02 15:02:42.681][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-03-02 15:02:42.681][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-03-02 15:02:42.681][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 15:02:42.682][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 15:02:42.683][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 15:02:42.684][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:02:42.685][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-03-02 15:02:42.686][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 15:02:42.687][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 15:02:42.688][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-03-02 15:02:42.689][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 15:02:42.690][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-03-02 15:02:42.695][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-03-02 15:02:42.696][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-03-02 15:02:42.697][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-03-02 15:02:42.698][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-03-02 15:02:42.699][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:42.699][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:42.700][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-03-02 15:02:42.701][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:42.702][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-03-02 15:02:42.703][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-03-02 15:02:42.707][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-03-02 15:02:42.711][biodb::testThat]
biodb.INFO [2024-03-02 15:02:42.711][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 15:02:42.712][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:42.713][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:42.715][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-03-02 15:02:42.716][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:42.719][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-03-02 15:02:42.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:42.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:42.730][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.739][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:42.775][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-03-02 15:02:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:42.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.864][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.888][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.901][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.907][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:42.914][biodb::testThat]
biodb.INFO [2024-03-02 15:02:42.915][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 15:02:42.916][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:42.916][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:42.918][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-03-02 15:02:42.919][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-02 15:02:42.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-03-02 15:02:42.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 15:02:42.924][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-03-02 15:02:42.925][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 15:02:42.926][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-03-02 15:02:42.926][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-03-02 15:02:42.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 15:02:42.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:42.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:42.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:42.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:42.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:42.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 15:02:42.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.940][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 15:02:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-03-02 15:02:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 15:02:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 15:02:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 15:02:42.981][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-03-02 15:02:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 15:02:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:42.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 15:02:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:42.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 15:02:42.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:42.997][biodb::testThat]
biodb.INFO [2024-03-02 15:02:42.998][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 15:02:42.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:42.999][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.004][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.005][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 15:02:43.006][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:43.007][biodb::testThat]
biodb.WARN [2024-03-02 15:02:43.009][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-03-02 15:02:43.012][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-03-02 15:02:43.019][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.020][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 15:02:43.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:43.022][biodb::testThat]
biodb.TRACE[2024-03-02 15:02:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:43.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.052][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-03-02 15:02:43.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:43.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-03-02 15:02:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 15:02:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 15:02:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 15:02:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 15:02:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 15:02:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 15:02:43.087][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.088][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 15:02:43.089][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:43.089][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.097][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.097][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 15:02:43.098][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:43.099][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.106][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.107][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 15:02:43.108][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:43.108][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:43.111][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-03-02 15:02:43.330][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-03-02 15:02:43.510][biodb::testThat]
biodb.INFO [2024-03-02 15:02:43.511][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 15:02:43.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 15:02:43.512][biodb::testThat]
biodb.DEBUG[2024-03-02 15:02:43.610][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-03-02 15:02:43.723][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 15:02:43.724][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-03-02 15:02:43.725][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-03-02 15:02:43.726][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 15:02:43.727][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 15:02:43.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 15:02:43.728][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 15:02:43.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 15:02:43.730][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 15:02:43.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1033 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1033 ]
> 
> proc.time()
   user  system elapsed 
 36.564   1.711  68.446

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)