| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-04 11:37:55 -0500 (Mon, 04 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2079/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.40.0 (landing page) Hai Fang
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the supraHex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: supraHex |
| Version: 1.40.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.40.0.tar.gz |
| StartedAt: 2024-03-03 23:49:06 -0500 (Sun, 03 Mar 2024) |
| EndedAt: 2024-03-03 23:50:30 -0500 (Sun, 03 Mar 2024) |
| EllapsedTime: 84.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.40.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/supraHex.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.40.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.064 | 0.009 | 0.073 | |
| sCompReorder | 2.598 | 0.201 | 2.815 | |
| sDistance | 0.286 | 0.006 | 0.295 | |
| sDmat | 0.324 | 0.015 | 0.340 | |
| sDmatCluster | 0.465 | 0.013 | 0.480 | |
| sDmatMinima | 0.303 | 0.006 | 0.310 | |
| sHexDist | 0.012 | 0.000 | 0.013 | |
| sHexGrid | 0.002 | 0.000 | 0.002 | |
| sHexGridVariant | 0.001 | 0.002 | 0.003 | |
| sHexPolygon | 0.106 | 0.002 | 0.110 | |
| sInitial | 0.008 | 0.000 | 0.009 | |
| sMapOverlay | 0.410 | 0.016 | 0.429 | |
| sNeighAny | 0.009 | 0.001 | 0.009 | |
| sNeighDirect | 0.009 | 0.001 | 0.010 | |
| sPipeline | 0.001 | 0.000 | 0.001 | |
| sTopology | 0.052 | 0.012 | 0.065 | |
| sTrainBatch | 0.041 | 0.002 | 0.044 | |
| sTrainSeq | 0.354 | 0.010 | 0.365 | |
| sTrainology | 0.017 | 0.001 | 0.018 | |
| sWriteData | 0.848 | 0.040 | 0.898 | |
| visColoralpha | 0.004 | 0.000 | 0.004 | |
| visColorbar | 0.022 | 0.001 | 0.022 | |
| visColormap | 0.003 | 0.001 | 0.004 | |
| visCompReorder | 3.743 | 0.339 | 4.110 | |
| visDmatCluster | 0 | 0 | 0 | |
| visDmatHeatmap | 0.000 | 0.001 | 0.000 | |
| visHeatmap | 0.095 | 0.003 | 0.098 | |
| visHeatmapAdv | 0.365 | 0.014 | 0.392 | |
| visHexAnimate | 0.001 | 0.000 | 0.001 | |
| visHexBarplot | 2.127 | 0.105 | 4.020 | |
| visHexComp | 0.879 | 0.029 | 1.576 | |
| visHexGrid | 0.756 | 0.018 | 1.163 | |
| visHexMapping | 1.579 | 0.121 | 1.739 | |
| visHexMulComp | 1.108 | 0.075 | 1.259 | |
| visHexPattern | 1.469 | 0.146 | 1.621 | |
| visKernels | 0.011 | 0.010 | 0.022 | |
| visTreeBSclust | 0 | 0 | 0 | |
| visTreeBootstrap | 0.001 | 0.001 | 0.001 | |
| visVp | 0.019 | 0.010 | 0.030 | |