| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-16 11:07:09 -0400 (Tue, 16 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.0 RC (2023-04-18 r84287) -- "Already Tomorrow" | 4560 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.0 RC (2023-04-18 r84287 ucrt) -- "Already Tomorrow" | 4333 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.0 RC (2023-04-13 r84266) -- "Already Tomorrow" | 4336 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the plotGrouper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plotGrouper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1509/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| plotGrouper 1.19.0 (landing page) John D. Gagnon
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: plotGrouper |
| Version: 1.19.0 |
| Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:plotGrouper.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings plotGrouper_1.19.0.tar.gz |
| StartedAt: 2023-05-16 04:53:15 -0400 (Tue, 16 May 2023) |
| EndedAt: 2023-05-16 04:54:11 -0400 (Tue, 16 May 2023) |
| EllapsedTime: 55.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: plotGrouper.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:plotGrouper.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings plotGrouper_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/plotGrouper.Rcheck'
* using R version 4.3.0 RC (2023-04-18 r84287 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'plotGrouper/DESCRIPTION' ... OK
* this is package 'plotGrouper' version '1.19.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'plotGrouper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in file 'R/readData.R':
unable to translate '<U+2014>' to native encoding
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gplot: no visible binding for global variable 'max_value'
gplot: no visible binding for global variable 'max_error'
Undefined global functions or variables:
max_error max_value
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'F:/biocbuild/bbs-3.18-bioc/meat/plotGrouper.Rcheck/00check.log'
for details.
plotGrouper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL plotGrouper ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'plotGrouper' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotGrouper)
plotGrouper.Rcheck/tests/testthat.Rout
R version 4.3.0 RC (2023-04-18 r84287 ucrt) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(plotGrouper)
>
> test_check("plotGrouper")
[ FAIL 0 | WARN 0 | SKIP 4 | PASS 0 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On Windows (4)
[ FAIL 0 | WARN 0 | SKIP 4 | PASS 0 ]
>
> proc.time()
user system elapsed
1.75 0.34 2.06
plotGrouper.Rcheck/plotGrouper-Ex.timings
| name | user | system | elapsed | |
| gplot | 1.56 | 0.12 | 1.69 | |
| organizeData | 0.07 | 0.00 | 0.06 | |
| pipe | 0 | 0 | 0 | |
| plotGrouper | 0 | 0 | 0 | |
| readData | 0.06 | 0.00 | 0.07 | |
| readData_example | 0 | 0 | 0 | |