Multiple platform build/check report for BioC 3.18 - INSTALL results for plethy on kunpeng2

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This page was generated on 2023-11-02 11:41:05 -0400 (Thu, 02 Nov 2023).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4729
palomino4	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4463
lconway	macOS 12.6.5 Monterey	x86_64	4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts"	4478
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4464
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

~~plethy 1.40.0~~ (landing page)
Daniel Bottomly

Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)

git_url: https://git.bioconductor.org/packages/plethy

git_branch: RELEASE_3_18

git_last_commit: 991dbff

git_last_commit_date: 2023-10-24 09:54:05 -0400 (Tue, 24 Oct 2023)

nebbiolo2

Linux (Ubuntu 22.04.2 LTS) / x86_64

ERROR

skipped

palomino4

Windows Server 2022 Datacenter / x64

ERROR

skipped

lconway

macOS 12.6.5 Monterey / x86_64

ERROR

skipped

kjohnson1

macOS 13.6.1 Ventura / arm64

see weekly results here

kunpeng2

Linux (openEuler 22.03 LTS-SP1) / aarch64

ERROR

skipped

INSTALL results for plethy on kunpeng2

To the developers/maintainers of the plethy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plethy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: plethy

Version: 1.40.0

Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL plethy

StartedAt: 2023-11-01 20:16:48 -0000 (Wed, 01 Nov 2023)

EndedAt: 2023-11-01 20:16:50 -0000 (Wed, 01 Nov 2023)

EllapsedTime: 2.5 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL plethy
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘plethy’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in 'Collate' field missing from '/home/biocbuild/bbs-3.18-bioc/meat/plethy/R':
  zzz.R
ERROR: unable to collate and parse R files for package ‘plethy’
* removing ‘/home/biocbuild/R/R-4.3.1/site-library/plethy’
* restoring previous ‘/home/biocbuild/R/R-4.3.1/site-library/plethy’