Multiple platform build/check report for BioC 3.18 - INSTALL results for maftools on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4729
palomino4	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4463
lconway	macOS 12.6.5 Monterey	x86_64	4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts"	4478
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4464
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the maftools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maftools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL maftools
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘maftools’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.1/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c ntcounts.c -o ntcounts.o
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.1/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c snpcounts.c -o snpcounts.o
snpcounts.c: In function ‘snpcounts’:
snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=]
   89 |   fprintf(tsv_fp, "#idxstats_mapped_reads\t%llu\n", tot_mapped);
      |                                            ~~~^     ~~~~~~~~~~
      |                                               |     |
      |                                               |     uint64_t {aka long unsigned int}
      |                                               long long unsigned int
      |                                            %lu
gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.1/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c somaticfreq.c -o somaticfreq.o
gcc -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /home/biocbuild/R/R-4.3.1/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-maftools/00new/maftools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maftools)

INSTALL results for maftools on kunpeng2

Summary

Command output