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### Running command:
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### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maanova
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* checking for file ‘maanova/DESCRIPTION’ ... OK
* preparing ‘maanova’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘maanova’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c makeratio.c -o makeratio.o
gcc -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c masvd.c -o masvd.o
In file included from /home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:40,
from masvd.h:1,
from masvd.c:17:
masvd.h:14:15: error: conflicting types for ‘dgesvd_’; have ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *)’
14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
| ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
masvd.h:14:6: note: in expansion of macro ‘F77_NAME’
14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
| ^~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:348:10: note: previous declaration of ‘dgesvd_’ with type ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *, size_t, size_t)’ {aka ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *, long unsigned int, long unsigned int)’}
348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
| ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:348:1: note: in expansion of macro ‘F77_NAME’
348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
| ^~~~~~~~
masvd.c: In function ‘masvd’:
masvd.c:68:18: error: too few arguments to function ‘dgesdd_’
68 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
| ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:2397:10: note: declared here
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:2397:1: note: in expansion of macro ‘F77_NAME’
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~~~
masvd.c:77:18: error: too few arguments to function ‘dgesdd_’
77 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
| ^~~~~~
masvd.c:77:9: note: in expansion of macro ‘F77_CALL’
77 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
| ^~~~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:2397:10: note: declared here
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.18-bioc/R/include/R_ext/Lapack.h:2397:1: note: in expansion of macro ‘F77_NAME’
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~~~
masvd.c: At top level:
masvd.c:114:9: warning: "/*" within comment [-Wcomment]
114 | /* work on a copy of x */
|
masvd.c:154:1: warning: "/*" within comment [-Wcomment]
154 | /*#ifndef IEEE_754
|
masvd.c:161:5: warning: "/*" within comment [-Wcomment]
161 | /* work on a copy of x */
|
masvd.c:165:9: warning: "/*" within comment [-Wcomment]
165 | /* ask for optimal size of work array */
|
masvd.c:189:9: warning: "/*" within comment [-Wcomment]
189 | /* ask for optimal size of work array */
|
make: *** [/home/biocbuild/bbs-3.18-bioc/R/etc/Makeconf:191: masvd.o] Error 1
ERROR: compilation failed for package ‘maanova’
* removing ‘/tmp/Rtmp6or2cr/Rinst2921fa33bf3697/maanova’
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ERROR: package installation failed