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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:lpsymphony.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings lpsymphony_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* this is package ‘lpsymphony’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lpsymphony’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Rglpk’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... WARNING
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/lpsymphony/libs/lpsymphony.so’:
  Found ‘__ZNSt3__14cerrE’, possibly from ‘std::cerr’ (C++)
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
  Found ‘___assert_rtn’, possibly from ‘assert’ (C)
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
  Found ‘_abort’, possibly from ‘abort’ (C)
  Found ‘_exit’, possibly from ‘exit’ (C)
  Found ‘_printf’, possibly from ‘printf’ (C)
  Found ‘_putchar’, possibly from ‘putchar’ (C)
  Found ‘_puts’, possibly from ‘printf’ (C), ‘puts’ (C)
  Found ‘_random’, possibly from ‘random’ (C)
  Found ‘_sprintf’, possibly from ‘sprintf’ (C)
  Found ‘_srandom’, possibly from ‘srandom’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL lpsymphony
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’
* installing *source* package ‘lpsymphony’ ...
** using staged installation
* Defaulting to clang/clang++
CXX is clang++ -arch x86_64 -std=gnu++17
CXX is clang++ -arch x86_64 -std=gnu++14
configure: loading site script /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin21.6.0
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2  
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++14 accepts -g... yes
rm: conftest.dSYM: is a directory
checking whether C++ compiler clang++ -arch x86_64 -std=gnu++14 works... yes
configure: C++ compiler options are: -w -g -O2  
configure: Trying to determine Fortran compiler name
checking for xlf_r... no
checking for fort77... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang -arch x86_64... none
checking dependency style of clang++ -arch x86_64 -std=gnu++14... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking host system type... i386-apple-darwin21.6.0
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by clang -arch x86_64... /Library/Developer/CommandLineTools/usr/bin/ld
checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no
checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... clang -arch x86_64 -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... clang++ -arch x86_64 -std=gnu++14 -E
checking the maximum length of command line arguments... 786432
checking command to parse /usr/bin/nm -B output from clang -arch x86_64 object... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
checking if clang -arch x86_64 supports -fno-rtti -fno-exceptions... rm: conftest.dSYM: is a directory
yes
checking for clang -arch x86_64 option to produce PIC... -fno-common
checking if clang -arch x86_64 PIC flag -fno-common works... rm: conftest.dSYM: is a directory
yes
checking if clang -arch x86_64 static flag -static works... rm: conftest.dSYM: is a directory
no
checking if clang -arch x86_64 supports -c -o file.o... rm: conftest.dSYM: is a directory
yes
checking whether the clang -arch x86_64 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin21.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
checking for ld used by clang++ -arch x86_64 -std=gnu++14... /Library/Developer/CommandLineTools/usr/bin/ld
checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no
checking whether the clang++ -arch x86_64 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking for clang++ -arch x86_64 -std=gnu++14 option to produce PIC... -fno-common
checking if clang++ -arch x86_64 -std=gnu++14 PIC flag -fno-common works... rm: conftest.dSYM: is a directory
yes
checking if clang++ -arch x86_64 -std=gnu++14 static flag -static works... rm: conftest.dSYM: is a directory
no
checking if clang++ -arch x86_64 -std=gnu++14 supports -c -o file.o... rm: conftest.dSYM: is a directory
yes
checking whether the clang++ -arch x86_64 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin21.6.0 dyld
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... rm: conftest.dSYM: is a directory
yes
checking if gfortran static flag -static works... rm: conftest.dSYM: is a directory
no
checking if gfortran supports -c -o file.o... rm: conftest.dSYM: is a directory
yes
checking whether the gfortran linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin21.6.0 dyld
checking how to hardcode library paths into programs... immediate
configure: Build is "i386-apple-darwin21.6.0".
configure: Applying patches to libtool for Darwin
checking if library version is set... no
checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
checking whether source of project Sample is available and should be compiled... no
checking whether source of project miblib3 is available and should be compiled... no
checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
checking whether source of project Osi is available and should be compiled... yes, source in Osi
checking whether source of project Clp is available and should be compiled... yes, source in Clp
checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
checking whether source of project DyLP is available and should be compiled... no
checking whether source of project Vol is available and should be compiled... no
checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
checking whether Clp is required... yes
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in CoinUtils
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY  'CC=clang -arch x86_64' 'CXX=clang++ -arch x86_64 -std=gnu++14' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CPPFLAGS=-I/opt/R/x86_64/include' 'LDFLAGS=-L/opt/R/x86_64/lib' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin21.6.0
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCOINUTILS_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++14 accepts -g... yes
rm: conftest.dSYM: is a directory
checking whether C++ compiler clang++ -arch x86_64 -std=gnu++14 works... yes
configure: C++ compiler options are: -w -g -O2   -DCOINUTILS_BUILD
configure: Trying to determine Fortran compiler name
checking for xlf_r... no
checking for fort77... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking how to get verbose linking output from gfortran... rm: conftest.dSYM: is a directory
-v
checking for Fortran libraries of gfortran... rm: conftest.dSYM: is a directory
 -L/opt/R/x86_64/lib -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0/../../.. -lgfortran -lgcc_s.1.1 -lquadmath -lSystem
configure: Corrected Fortran libraries:  -L/opt/R/x86_64/lib -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0/../../.. -lgfortran -lquadmath -lSystem
checking for dummy main to link with Fortran libraries... rm: conftest.dSYM: is a directory
none
checking for Fortran name-mangling scheme... rm: conftest.dSYM: is a directory
lower case, underscore, no extra underscore
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang -arch x86_64... none
checking dependency style of clang++ -arch x86_64 -std=gnu++14... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:6:10
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether isfinite is declared... no
checking whether finite is declared... yes
checking for cmath... (cached) yes
checking for cfloat... (cached) yes
checking for cieeefp... (cached) no
checking for ieeefp.h... (cached) no
checking whether isnan is declared... no
checking whether std::isnan(42.42) is declared... yes
checking cinttypes usability... yes
checking cinttypes presence... yes
checking for cinttypes... yes
checking cstdint usability... yes
checking cstdint presence... yes
checking for cstdint... yes
checking for int64_t... yes
checking for intptr_t... yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking endian.h usability... no
checking endian.h presence... no
checking for endian.h... no
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for BLAS in Veclib... yes: -framework Accelerate
checking whether LAPACK is already available with BLAS library... yes: -framework Accelerate
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... NO
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating coinutils.pc
config.status: creating coinutils-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_coinutils.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of CoinUtils successful
configure: configuring in Osi
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY  'CC=clang -arch x86_64' 'CXX=clang++ -arch x86_64 -std=gnu++14' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CPPFLAGS=-I/opt/R/x86_64/include' 'LDFLAGS=-L/opt/R/x86_64/lib' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin21.6.0
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DOSI_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++14 accepts -g... yes
rm: conftest.dSYM: is a directory
checking whether C++ compiler clang++ -arch x86_64 -std=gnu++14 works... yes
configure: C++ compiler options are: -w -g -O2   -DOSI_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang -arch x86_64... none
checking dependency style of clang++ -arch x86_64 -std=gnu++14... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 13:4:12
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package SoPlex... not given: No package 'coinsoplex' found
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for Cplex... no
checking if user provides library for Mosek... no
checking if user provides library for Xpress... no
checking if user provides library for Gurobi... no
configure: WARNING: No solver available, examples will not work.
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... NO
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Osi/Makefile
config.status: creating src/OsiCpx/Makefile
config.status: creating src/OsiGlpk/Makefile
config.status: creating src/OsiMsk/Makefile
config.status: creating src/OsiXpr/Makefile
config.status: creating src/OsiGrb/Makefile
config.status: creating src/OsiSpx/Makefile
config.status: creating src/OsiCommonTest/Makefile
config.status: creating test/Makefile
config.status: creating osi.pc
config.status: creating osi-uninstalled.pc
config.status: creating osi-unittests.pc
config.status: creating osi-unittests-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/Osi/config.h
config.status: creating src/Osi/config_osi.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Osi successful
configure: configuring in Clp
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY  'CC=clang -arch x86_64' 'CXX=clang++ -arch x86_64 -std=gnu++14' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CPPFLAGS=-I/opt/R/x86_64/include' 'LDFLAGS=-L/opt/R/x86_64/lib' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin21.6.0
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCLP_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++14 accepts -g... yes
rm: conftest.dSYM: is a directory
checking whether C++ compiler clang++ -arch x86_64 -std=gnu++14 works... yes
configure: C++ compiler options are: -w -g -O2   -DCLP_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang -arch x86_64... none
checking dependency style of clang++ -arch x86_64 -std=gnu++14... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 14:6:13
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking if user provides library for AMD... no
checking if user provides library for CHOLMOD... no
checking for COIN-OR package Glpk... not given: No package 'coinglpk' found
checking for COIN-OR package Mumps... not given: No package 'coinmumps' found
checking for COIN-OR package ASL... not given: No package 'coinasl' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... NO
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking for doxygen doc'n for Osi ... ../Osi/doxydoc (tag)
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/OsiClp/Makefile
config.status: creating test/Makefile
config.status: creating clp.pc
config.status: creating clp-uninstalled.pc
config.status: creating osi-clp.pc
config.status: creating osi-clp-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_clp.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Clp successful
configure: configuring in Cgl
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY  'CC=clang -arch x86_64' 'CXX=clang++ -arch x86_64 -std=gnu++14' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CPPFLAGS=-I/opt/R/x86_64/include' 'LDFLAGS=-L/opt/R/x86_64/lib' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin21.6.0
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCGL_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++14 accepts -g... yes
rm: conftest.dSYM: is a directory
checking whether C++ compiler clang++ -arch x86_64 -std=gnu++14 works... yes
configure: C++ compiler options are: -w -g -O2   -DCGL_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang -arch x86_64... none
checking dependency style of clang++ -arch x86_64 -std=gnu++14... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 10:4:9
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.10.6 
checking for COIN-OR package Osi... yes: 0.107.4 
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package OsiClp... yes: 1.16.6 
checking for COIN-OR package OsiCpx... not given: No package 'osi-cplex' found
checking for COIN-OR package OsiGlpk... not given: No package 'osi-glpk' found
checking for COIN-OR package OsiMsk... not given: No package 'osi-mosek' found
checking for COIN-OR package OsiXpr... not given: No package 'osi-xpress' found
checking for COIN-OR package OsiVol... not given: No package 'osi-vol' found
checking for COIN-OR package OsiDyLP... not given: No package 'osi-dylp' found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... yes
checking for dot... NO
checking for doxygen doc'n for CoinUtils ... ../CoinUtils/doxydoc (tag)
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/CglAllDifferent/Makefile
config.status: creating src/CglClique/Makefile
config.status: creating src/CglDuplicateRow/Makefile
config.status: creating src/CglFlowCover/Makefile
config.status: creating src/CglGMI/Makefile
config.status: creating src/CglGomory/Makefile
config.status: creating src/CglKnapsackCover/Makefile
config.status: creating src/CglLandP/Makefile
config.status: creating src/CglLiftAndProject/Makefile
config.status: creating src/CglMixedIntegerRounding/Makefile
config.status: creating src/CglMixedIntegerRounding2/Makefile
config.status: creating src/CglOddHole/Makefile
config.status: creating src/CglPreProcess/Makefile
config.status: creating src/CglProbing/Makefile
config.status: creating src/CglRedSplit/Makefile
config.status: creating src/CglRedSplit2/Makefile
config.status: creating src/CglResidualCapacity/Makefile
config.status: creating src/CglSimpleRounding/Makefile
config.status: creating src/CglTwomir/Makefile
config.status: creating src/CglZeroHalf/Makefile
config.status: creating test/Makefile
config.status: creating cgl.pc
config.status: creating cgl-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_cgl.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Cgl successful
configure: configuring in SYMPHONY
configure: running /bin/sh './configure' --prefix=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY  'CC=clang -arch x86_64' 'CXX=clang++ -arch x86_64 -std=gnu++14' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-openmp' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CPPFLAGS=-I/opt/R/x86_64/include' 'LDFLAGS=-L/opt/R/x86_64/lib' --cache-file=/dev/null --srcdir=.
configure: loading site script /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... i386-apple-darwin21.6.0
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DSYMPHONY_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++14 accepts -g... yes
rm: conftest.dSYM: is a directory
checking whether C++ compiler clang++ -arch x86_64 -std=gnu++14 works... yes
configure: C++ compiler options are: -w -g -O2   -DSYMPHONY_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of clang -arch x86_64... none
checking dependency style of clang++ -arch x86_64 -std=gnu++14... none
checking whether to enable maintainer-specific portions of Makefiles... no
configure: Using libtool script in directory ..
checking if library version is set... 9:10:6
checking for pkg-config... pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinDepend... yes: 2.10.6 0.107.4 
checking for COIN-OR package Clp... yes: 1.16.6 
checking for COIN-OR package DyLP... not given: No package 'osi-dylp' found
checking for COIN-OR package Vol... not given: No package 'osi-vol' found
checking for COIN-OR package Cgl... yes: 0.59.4 
checking for COIN-OR package OsiTests... yes: 0.107.4 
checking for COIN-OR package Sample... not given: No package 'coindatasample' found
checking for COIN-OR package Netlib... not given: No package 'coindatanetlib' found
checking for COIN-OR package Miplib3... not given: No package 'coindatamiplib3' found
checking for COIN-OR package Cpx... not given: No package 'osi-cplex' found
checking for COIN-OR package Glpk... not given: No package 'osi-glpk' found
checking for COIN-OR package Msk... not given: No package 'osi-mosek' found
checking for COIN-OR package Xpr... not given: No package 'osi-xpress' found
checking for SYMPHONY default solver... Clp
checking whether to compile with gmpl... no
checking whether to compile application library... no
checking if user provides library for Pvm... no
checking whether this is a VPATH configuration... no
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/OsiSym/Makefile
config.status: creating test/Makefile
config.status: creating Examples/Makefile
config.status: creating Applications/Makefile.Applications
config.status: creating Applications/CNRP/Makefile
config.status: creating Applications/MATCH/Makefile
config.status: creating Applications/MCKP/Makefile
config.status: creating Applications/MPP/Makefile
config.status: creating Applications/SPP/Makefile
config.status: creating Applications/SPP+CUTS/Makefile
config.status: creating Applications/USER/Makefile
config.status: creating Applications/VRP/Makefile
config.status: creating symphony.pc
config.status: creating symphony-app.pc
config.status: creating symphony-uninstalled.pc
config.status: creating osi-sym.pc
config.status: creating osi-sym-uninstalled.pc
config.status: creating include/config.h
config.status: creating include/config_sym.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of SYMPHONY successful
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Main configuration of SYMPHONY successful
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
Making all in CoinUtils
Making all in src
make  all-am
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinAlloc.lo CoinAlloc.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinAlloc.cpp  -fno-common -DPIC -o CoinAlloc.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinBuild.lo CoinBuild.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinBuild.cpp  -fno-common -DPIC -o CoinBuild.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinDenseVector.lo CoinDenseVector.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinDenseVector.cpp  -fno-common -DPIC -o CoinDenseVector.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinError.lo CoinError.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinError.cpp  -fno-common -DPIC -o CoinError.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinFactorization1.lo CoinFactorization1.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinFactorization1.cpp  -fno-common -DPIC -o CoinFactorization1.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinFactorization2.lo CoinFactorization2.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinFactorization2.cpp  -fno-common -DPIC -o CoinFactorization2.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinFactorization3.lo CoinFactorization3.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinFactorization3.cpp  -fno-common -DPIC -o CoinFactorization3.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinFactorization4.lo CoinFactorization4.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinFactorization4.cpp  -fno-common -DPIC -o CoinFactorization4.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinSimpFactorization.lo CoinSimpFactorization.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinSimpFactorization.cpp  -fno-common -DPIC -o CoinSimpFactorization.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinDenseFactorization.lo CoinDenseFactorization.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinDenseFactorization.cpp  -fno-common -DPIC -o CoinDenseFactorization.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinOslFactorization.lo CoinOslFactorization.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinOslFactorization.cpp  -fno-common -DPIC -o CoinOslFactorization.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinOslFactorization2.lo CoinOslFactorization2.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinOslFactorization2.cpp  -fno-common -DPIC -o CoinOslFactorization2.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinOslFactorization3.lo CoinOslFactorization3.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinOslFactorization3.cpp  -fno-common -DPIC -o CoinOslFactorization3.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinFileIO.lo CoinFileIO.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinFileIO.cpp  -fno-common -DPIC -o CoinFileIO.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinFinite.lo CoinFinite.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinFinite.cpp  -fno-common -DPIC -o CoinFinite.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinIndexedVector.lo CoinIndexedVector.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinIndexedVector.cpp  -fno-common -DPIC -o CoinIndexedVector.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinLpIO.lo CoinLpIO.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinLpIO.cpp  -fno-common -DPIC -o CoinLpIO.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinMessage.lo CoinMessage.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinMessage.cpp  -fno-common -DPIC -o CoinMessage.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinMessageHandler.lo CoinMessageHandler.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinMessageHandler.cpp  -fno-common -DPIC -o CoinMessageHandler.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinModel.lo CoinModel.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinModel.cpp  -fno-common -DPIC -o CoinModel.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinStructuredModel.lo CoinStructuredModel.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinStructuredModel.cpp  -fno-common -DPIC -o CoinStructuredModel.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`   -I/opt/R/x86_64/include  -w -g -O2   -DCOINUTILS_BUILD -c -o CoinModelUseful.lo CoinModelUseful.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/opt/R/x86_64/include -w -g -O2 -DCOINUTILS_BUILD -c CoinModelUseful.cpp  -fno-common -DPIC -o CoinModelUseful.o
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/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCOINUTILS_BUILD  -L/opt/R/x86_64/lib -o libCoinUtils.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:6:10 CoinAlloc.lo CoinBuild.lo CoinDenseVector.lo CoinError.lo CoinFactorization1.lo CoinFactorization2.lo CoinFactorization3.lo CoinFactorization4.lo CoinSimpFactorization.lo CoinDenseFactorization.lo CoinOslFactorization.lo CoinOslFactorization2.lo CoinOslFactorization3.lo CoinFileIO.lo CoinFinite.lo CoinIndexedVector.lo CoinLpIO.lo CoinMessage.lo CoinMessageHandler.lo CoinModel.lo CoinStructuredModel.lo CoinModelUseful.lo CoinModelUseful2.lo CoinMpsIO.lo CoinPackedMatrix.lo CoinPackedVector.lo CoinPackedVectorBase.lo CoinParam.lo CoinParamUtils.lo CoinPostsolveMatrix.lo CoinPrePostsolveMatrix.lo CoinPresolveDoubleton.lo CoinPresolveDual.lo CoinPresolveDupcol.lo CoinPresolveEmpty.lo CoinPresolveFixed.lo CoinPresolveForcing.lo CoinPresolveHelperFunctions.lo CoinPresolveImpliedFree.lo CoinPresolveIsolated.lo CoinPresolveMatrix.lo CoinPresolvePsdebug.lo CoinPresolveMonitor.lo CoinPresolveSingleton.lo CoinPresolveSubst.lo CoinPresolveTighten.lo CoinPresolveTripleton.lo CoinPresolveUseless.lo CoinPresolveZeros.lo CoinRational.lo CoinSearchTree.lo CoinShallowPackedVector.lo CoinSnapshot.lo CoinWarmStartBasis.lo CoinWarmStartVector.lo CoinWarmStartDual.lo CoinWarmStartPrimalDual.lo -framework Accelerate -framework Accelerate -lm  
mkdir .libs
ar cru .libs/libCoinUtils.a  CoinAlloc.o CoinBuild.o CoinDenseVector.o CoinError.o CoinFactorization1.o CoinFactorization2.o CoinFactorization3.o CoinFactorization4.o CoinSimpFactorization.o CoinDenseFactorization.o CoinOslFactorization.o CoinOslFactorization2.o CoinOslFactorization3.o CoinFileIO.o CoinFinite.o CoinIndexedVector.o CoinLpIO.o CoinMessage.o CoinMessageHandler.o CoinModel.o CoinStructuredModel.o CoinModelUseful.o CoinModelUseful2.o CoinMpsIO.o CoinPackedMatrix.o CoinPackedVector.o CoinPackedVectorBase.o CoinParam.o CoinParamUtils.o CoinPostsolveMatrix.o CoinPrePostsolveMatrix.o CoinPresolveDoubleton.o CoinPresolveDual.o CoinPresolveDupcol.o CoinPresolveEmpty.o CoinPresolveFixed.o CoinPresolveForcing.o CoinPresolveHelperFunctions.o CoinPresolveImpliedFree.o CoinPresolveIsolated.o CoinPresolveMatrix.o CoinPresolvePsdebug.o CoinPresolveMonitor.o CoinPresolveSingleton.o CoinPresolveSubst.o CoinPresolveTighten.o CoinPresolveTripleton.o CoinPresolveUseless.o CoinPresolveZeros.o CoinRational.o CoinSearchTree.o CoinShallowPackedVector.o CoinSnapshot.o CoinWarmStartBasis.o CoinWarmStartVector.o CoinWarmStartDual.o CoinWarmStartPrimalDual.o
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinAlloc.o) has no symbols
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ranlib .libs/libCoinUtils.a
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/Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libCoinUtils.a(CoinWarmStartVector.o) has no symbols
creating libCoinUtils.la
(cd .libs && rm -f libCoinUtils.la && ln -s ../libCoinUtils.la libCoinUtils.la)
make[3]: Nothing to be done for `all-am'.
Making all in Osi
Making all in src/Osi
make  all-am
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DOSI_BUILD -c -o OsiPresolve.lo OsiPresolve.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DOSI_BUILD -c -o OsiSolverInterface.lo OsiSolverInterface.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DOSI_BUILD -c OsiSolverInterface.cpp  -fno-common -DPIC -o OsiSolverInterface.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DOSI_BUILD  -L/opt/R/x86_64/lib -o libOsi.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 13:4:12 OsiAuxInfo.lo OsiBranchingObject.lo OsiChooseVariable.lo OsiColCut.lo OsiCut.lo OsiCuts.lo OsiNames.lo OsiPresolve.lo OsiRowCut.lo OsiRowCutDebugger.lo OsiSolverBranch.lo OsiSolverInterface.lo /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm  
mkdir .libs
ar cru .libs/libOsi.a  OsiAuxInfo.o OsiBranchingObject.o OsiChooseVariable.o OsiColCut.o OsiCut.o OsiCuts.o OsiNames.o OsiPresolve.o OsiRowCut.o OsiRowCutDebugger.o OsiSolverBranch.o OsiSolverInterface.o
ranlib .libs/libOsi.a
creating libOsi.la
(cd .libs && rm -f libOsi.la && ln -s ../libOsi.la libOsi.la)
Making all in src/OsiCommonTest
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mkdir .libs
ar cru .libs/libOsiCommonTests.a  OsiColCutTest.o OsiCutsTest.o OsiRowCutDebuggerTest.o OsiRowCutTest.o OsiSimplexAPITest.o OsiNetlibTest.o OsiUnitTestUtils.o OsiSolverInterfaceTest.o
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creating libOsiCommonTests.la
(cd .libs && rm -f libOsiCommonTests.la && ln -s ../libOsiCommonTests.la libOsiCommonTests.la)
make[3]: Nothing to be done for `all-am'.
Making all in Clp
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make  all-am
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 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpPrimalColumnSteepest.cpp  -fno-common -DPIC -o ClpPrimalColumnSteepest.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpQuadraticObjective.lo ClpQuadraticObjective.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpQuadraticObjective.cpp  -fno-common -DPIC -o ClpQuadraticObjective.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSimplex.lo ClpSimplex.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSimplex.cpp  -fno-common -DPIC -o ClpSimplex.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSimplexDual.lo ClpSimplexDual.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSimplexDual.cpp  -fno-common -DPIC -o ClpSimplexDual.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSimplexNonlinear.lo ClpSimplexNonlinear.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSimplexNonlinear.cpp  -fno-common -DPIC -o ClpSimplexNonlinear.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSimplexOther.lo ClpSimplexOther.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSimplexOther.cpp  -fno-common -DPIC -o ClpSimplexOther.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSimplexPrimal.lo ClpSimplexPrimal.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSimplexPrimal.cpp  -fno-common -DPIC -o ClpSimplexPrimal.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSolve.lo ClpSolve.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSolve.cpp  -fno-common -DPIC -o ClpSolve.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o Idiot.lo Idiot.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c Idiot.cpp  -fno-common -DPIC -o Idiot.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o IdiSolve.lo IdiSolve.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c IdiSolve.cpp  -fno-common -DPIC -o IdiSolve.o
/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCLP_BUILD  -L/opt/R/x86_64/lib -o libClp.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpCholeskyBase.lo ClpCholeskyDense.lo ClpConstraint.lo ClpConstraintLinear.lo ClpConstraintQuadratic.lo Clp_C_Interface.lo ClpDualRowDantzig.lo ClpDualRowPivot.lo ClpDualRowSteepest.lo ClpDummyMatrix.lo ClpDynamicExampleMatrix.lo ClpDynamicMatrix.lo ClpEventHandler.lo ClpFactorization.lo ClpGubDynamicMatrix.lo ClpGubMatrix.lo ClpHelperFunctions.lo ClpInterior.lo ClpLinearObjective.lo ClpMatrixBase.lo ClpMessage.lo ClpModel.lo ClpNetworkBasis.lo ClpNetworkMatrix.lo ClpNonLinearCost.lo ClpNode.lo ClpObjective.lo ClpPackedMatrix.lo ClpPlusMinusOneMatrix.lo ClpPredictorCorrector.lo ClpPdco.lo ClpPdcoBase.lo ClpLsqr.lo ClpPresolve.lo ClpPrimalColumnDantzig.lo ClpPrimalColumnPivot.lo ClpPrimalColumnSteepest.lo ClpQuadraticObjective.lo ClpSimplex.lo ClpSimplexDual.lo ClpSimplexNonlinear.lo ClpSimplexOther.lo ClpSimplexPrimal.lo ClpSolve.lo Idiot.lo IdiSolve.lo       /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm  
mkdir .libs
ar cru .libs/libClp.a  ClpCholeskyBase.o ClpCholeskyDense.o ClpConstraint.o ClpConstraintLinear.o ClpConstraintQuadratic.o Clp_C_Interface.o ClpDualRowDantzig.o ClpDualRowPivot.o ClpDualRowSteepest.o ClpDummyMatrix.o ClpDynamicExampleMatrix.o ClpDynamicMatrix.o ClpEventHandler.o ClpFactorization.o ClpGubDynamicMatrix.o ClpGubMatrix.o ClpHelperFunctions.o ClpInterior.o ClpLinearObjective.o ClpMatrixBase.o ClpMessage.o ClpModel.o ClpNetworkBasis.o ClpNetworkMatrix.o ClpNonLinearCost.o ClpNode.o ClpObjective.o ClpPackedMatrix.o ClpPlusMinusOneMatrix.o ClpPredictorCorrector.o ClpPdco.o ClpPdcoBase.o ClpLsqr.o ClpPresolve.o ClpPrimalColumnDantzig.o ClpPrimalColumnPivot.o ClpPrimalColumnSteepest.o ClpQuadraticObjective.o ClpSimplex.o ClpSimplexDual.o ClpSimplexNonlinear.o ClpSimplexOther.o ClpSimplexPrimal.o ClpSolve.o Idiot.o IdiSolve.o
ranlib .libs/libClp.a
creating libClp.la
(cd .libs && rm -f libClp.la && ln -s ../libClp.la libClp.la)
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpSolver.lo ClpSolver.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c ClpSolver.cpp  -fno-common -DPIC -o ClpSolver.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o CbcOrClpParam.lo CbcOrClpParam.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c CbcOrClpParam.cpp  -fno-common -DPIC -o CbcOrClpParam.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o Clp_ampl.lo Clp_ampl.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c Clp_ampl.cpp  -fno-common -DPIC -o Clp_ampl.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o MyEventHandler.lo MyEventHandler.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c MyEventHandler.cpp  -fno-common -DPIC -o MyEventHandler.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o MyMessageHandler.lo MyMessageHandler.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c MyMessageHandler.cpp  -fno-common -DPIC -o MyMessageHandler.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o unitTest.lo unitTest.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -DCOIN_HAS_CLP -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c unitTest.cpp  -fno-common -DPIC -o unitTest.o
/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCLP_BUILD  -L/opt/R/x86_64/lib -o libClpSolver.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 ClpSolver.lo CbcOrClpParam.lo Clp_ampl.lo MyEventHandler.lo MyMessageHandler.lo unitTest.lo /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm  libClp.la 
ar cru .libs/libClpSolver.a  ClpSolver.o CbcOrClpParam.o Clp_ampl.o MyEventHandler.o MyMessageHandler.o unitTest.o
ranlib .libs/libClpSolver.a
creating libClpSolver.la
(cd .libs && rm -f libClpSolver.la && ln -s ../libClpSolver.la libClpSolver.la)
clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -DCOIN_HAS_CLP   -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o ClpMain.o ClpMain.cpp
/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCLP_BUILD  -L/opt/R/x86_64/lib -o clp  ClpMain.o libClpSolver.la libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   
clang++ -arch x86_64 -std=gnu++14 -w -g -O2 -DCLP_BUILD -o clp ClpMain.o -framework Accelerate -Wl,-bind_at_load  -L/opt/R/x86_64/lib ./.libs/libClpSolver.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a ./.libs/libClp.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -lm
Making all in src/OsiClp
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCLP_BUILD -c -o OsiClpSolverInterface.lo OsiClpSolverInterface.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCLP_BUILD -c OsiClpSolverInterface.cpp  -fno-common -DPIC -o OsiClpSolverInterface.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCLP_BUILD  -L/opt/R/x86_64/lib -o libOsiClp.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 14:6:13 OsiClpSolverInterface.lo /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm  ../libClp.la 
mkdir .libs
ar cru .libs/libOsiClp.a  OsiClpSolverInterface.o
ranlib .libs/libOsiClp.a
creating libOsiClp.la
(cd .libs && rm -f libOsiClp.la && ln -s ../libOsiClp.la libOsiClp.la)
make[3]: Nothing to be done for `all-am'.
Making all in Cgl
Making all in src
make  all-recursive
Making all in CglAllDifferent
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglAllDifferent.lo CglAllDifferent.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglAllDifferent.cpp  -fno-common -DPIC -o CglAllDifferent.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglAllDifferent.la  -no-undefined -version-info 10:4:9 CglAllDifferent.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglAllDifferent.a  CglAllDifferent.o
ranlib .libs/libCglAllDifferent.a
creating libCglAllDifferent.la
(cd .libs && rm -f libCglAllDifferent.la && ln -s ../libCglAllDifferent.la libCglAllDifferent.la)
Making all in CglClique
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglClique.lo CglClique.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglClique.cpp  -fno-common -DPIC -o CglClique.o
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creating libCglClique.la
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglMixedIntegerRounding2Test.lo CglMixedIntegerRounding2Test.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglMixedIntegerRounding2Test.cpp  -fno-common -DPIC -o CglMixedIntegerRounding2Test.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglMixedIntegerRounding2.la  -no-undefined -version-info 10:4:9 CglMixedIntegerRounding2.lo CglMixedIntegerRounding2Test.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglMixedIntegerRounding2.a  CglMixedIntegerRounding2.o CglMixedIntegerRounding2Test.o
ranlib .libs/libCglMixedIntegerRounding2.a
creating libCglMixedIntegerRounding2.la
(cd .libs && rm -f libCglMixedIntegerRounding2.la && ln -s ../libCglMixedIntegerRounding2.la libCglMixedIntegerRounding2.la)
Making all in CglOddHole
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglOddHole.lo CglOddHole.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglOddHoleTest.lo CglOddHoleTest.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglOddHole.la  -no-undefined -version-info 10:4:9 CglOddHole.lo CglOddHoleTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglOddHole.a  CglOddHole.o CglOddHoleTest.o
ranlib .libs/libCglOddHole.a
creating libCglOddHole.la
(cd .libs && rm -f libCglOddHole.la && ln -s ../libCglOddHole.la libCglOddHole.la)
Making all in CglPreProcess
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I`echo ./../CglProbing` -I`echo ./../CglDuplicateRow` -I`echo ./../CglClique` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglPreProcess.lo CglPreProcess.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglPreProcess.la  -no-undefined -version-info 10:4:9 CglPreProcess.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglPreProcess.a  CglPreProcess.o
ranlib .libs/libCglPreProcess.a
creating libCglPreProcess.la
(cd .libs && rm -f libCglPreProcess.la && ln -s ../libCglPreProcess.la libCglPreProcess.la)
Making all in CglProbing
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglProbing.lo CglProbing.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglProbingTest.lo CglProbingTest.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglProbing.la  -no-undefined -version-info 10:4:9 CglProbing.lo CglProbingTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglProbing.a  CglProbing.o CglProbingTest.o
ranlib .libs/libCglProbing.a
creating libCglProbing.la
(cd .libs && rm -f libCglProbing.la && ln -s ../libCglProbing.la libCglProbing.la)
Making all in CglRedSplit
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglRedSplit.lo CglRedSplit.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglRedSplit.cpp  -fno-common -DPIC -o CglRedSplit.o
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglRedSplitTest.lo CglRedSplitTest.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglRedSplitParam.lo CglRedSplitParam.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglRedSplitParam.cpp  -fno-common -DPIC -o CglRedSplitParam.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglRedSplit.la  -no-undefined -version-info 10:4:9 CglRedSplit.lo CglRedSplitTest.lo CglRedSplitParam.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglRedSplit.a  CglRedSplit.o CglRedSplitTest.o CglRedSplitParam.o
ranlib .libs/libCglRedSplit.a
creating libCglRedSplit.la
(cd .libs && rm -f libCglRedSplit.la && ln -s ../libCglRedSplit.la libCglRedSplit.la)
Making all in CglRedSplit2
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglRedSplit2.lo CglRedSplit2.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglRedSplit2Test.lo CglRedSplit2Test.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglRedSplit2Param.lo CglRedSplit2Param.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglRedSplit2Param.cpp  -fno-common -DPIC -o CglRedSplit2Param.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglRedSplit2.la  -no-undefined -version-info 10:4:9 CglRedSplit2.lo CglRedSplit2Test.lo CglRedSplit2Param.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglRedSplit2.a  CglRedSplit2.o CglRedSplit2Test.o CglRedSplit2Param.o
ranlib .libs/libCglRedSplit2.a
creating libCglRedSplit2.la
(cd .libs && rm -f libCglRedSplit2.la && ln -s ../libCglRedSplit2.la libCglRedSplit2.la)
Making all in CglResidualCapacity
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglResidualCapacity.lo CglResidualCapacity.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglResidualCapacityTest.lo CglResidualCapacityTest.cpp
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/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglResidualCapacity.la  -no-undefined -version-info 10:4:9 CglResidualCapacity.lo CglResidualCapacityTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglResidualCapacity.a  CglResidualCapacity.o CglResidualCapacityTest.o
ranlib .libs/libCglResidualCapacity.a
creating libCglResidualCapacity.la
(cd .libs && rm -f libCglResidualCapacity.la && ln -s ../libCglResidualCapacity.la libCglResidualCapacity.la)
Making all in CglSimpleRounding
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglSimpleRounding.lo CglSimpleRounding.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglSimpleRounding.cpp  -fno-common -DPIC -o CglSimpleRounding.o
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglSimpleRoundingTest.lo CglSimpleRoundingTest.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglSimpleRoundingTest.cpp  -fno-common -DPIC -o CglSimpleRoundingTest.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglSimpleRounding.la  -no-undefined -version-info 10:4:9 CglSimpleRounding.lo CglSimpleRoundingTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglSimpleRounding.a  CglSimpleRounding.o CglSimpleRoundingTest.o
ranlib .libs/libCglSimpleRounding.a
creating libCglSimpleRounding.la
(cd .libs && rm -f libCglSimpleRounding.la && ln -s ../libCglSimpleRounding.la libCglSimpleRounding.la)
Making all in CglTwomir
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglTwomir.lo CglTwomir.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglTwomir.cpp  -fno-common -DPIC -o CglTwomir.o
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I..  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglTwomirTest.lo CglTwomirTest.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I.. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglTwomirTest.cpp  -fno-common -DPIC -o CglTwomirTest.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglTwomir.la  -no-undefined -version-info 10:4:9 CglTwomir.lo CglTwomirTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglTwomir.a  CglTwomir.o CglTwomirTest.o
ranlib .libs/libCglTwomir.a
creating libCglTwomir.la
(cd .libs && rm -f libCglTwomir.la && ln -s ../libCglTwomir.la libCglTwomir.la)
Making all in CglZeroHalf
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglZeroHalf.lo CglZeroHalf.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglZeroHalf.cpp  -fno-common -DPIC -o CglZeroHalf.o
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o Cgl012cut.lo Cgl012cut.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c Cgl012cut.cpp  -fno-common -DPIC -o Cgl012cut.o
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I`echo ./..` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglZeroHalfTest.lo CglZeroHalfTest.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I./.. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglZeroHalfTest.cpp  -fno-common -DPIC -o CglZeroHalfTest.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCglZeroHalf.la  -no-undefined -version-info 10:4:9 CglZeroHalf.lo Cgl012cut.lo CglZeroHalfTest.lo  
mkdir .libs
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libCglZeroHalf.a  CglZeroHalf.o Cgl012cut.o CglZeroHalfTest.o
ranlib .libs/libCglZeroHalf.a
creating libCglZeroHalf.la
(cd .libs && rm -f libCglZeroHalf.la && ln -s ../libCglZeroHalf.la libCglZeroHalf.la)
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglCutGenerator.lo CglCutGenerator.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglCutGenerator.cpp  -fno-common -DPIC -o CglCutGenerator.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglMessage.lo CglMessage.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglMessage.cpp  -fno-common -DPIC -o CglMessage.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglStored.lo CglStored.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglStored.cpp  -fno-common -DPIC -o CglStored.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglParam.lo CglParam.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglParam.cpp  -fno-common -DPIC -o CglParam.o
/bin/sh ../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DCGL_BUILD -c -o CglTreeInfo.lo CglTreeInfo.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DCGL_BUILD -c CglTreeInfo.cpp  -fno-common -DPIC -o CglTreeInfo.o
/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DCGL_BUILD  -L/opt/R/x86_64/lib -o libCgl.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 10:4:9 CglCutGenerator.lo CglMessage.lo CglStored.lo CglParam.lo CglTreeInfo.lo CglAllDifferent/libCglAllDifferent.la CglClique/libCglClique.la CglDuplicateRow/libCglDuplicateRow.la CglFlowCover/libCglFlowCover.la CglGMI/libCglGMI.la CglGomory/libCglGomory.la CglKnapsackCover/libCglKnapsackCover.la CglLandP/libCglLandP.la CglLiftAndProject/libCglLiftAndProject.la CglMixedIntegerRounding/libCglMixedIntegerRounding.la CglMixedIntegerRounding2/libCglMixedIntegerRounding2.la CglOddHole/libCglOddHole.la CglPreProcess/libCglPreProcess.la CglProbing/libCglProbing.la CglRedSplit/libCglRedSplit.la CglRedSplit2/libCglRedSplit2.la CglResidualCapacity/libCglResidualCapacity.la CglSimpleRounding/libCglSimpleRounding.la CglTwomir/libCglTwomir.la CglZeroHalf/libCglZeroHalf.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm  
mkdir .libs
rm -fr .libs/libCgl.lax
mkdir .libs/libCgl.lax
rm -fr .libs/libCgl.lax/libCglAllDifferent.a
mkdir .libs/libCgl.lax/libCglAllDifferent.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/.libs/libCglAllDifferent.a
(cd .libs/libCgl.lax/libCglAllDifferent.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/.libs/libCglAllDifferent.a)
rm -fr .libs/libCgl.lax/libCglClique.a
mkdir .libs/libCgl.lax/libCglClique.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique/.libs/libCglClique.a
(cd .libs/libCgl.lax/libCglClique.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique/.libs/libCglClique.a)
rm -fr .libs/libCgl.lax/libCglDuplicateRow.a
mkdir .libs/libCgl.lax/libCglDuplicateRow.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/.libs/libCglDuplicateRow.a
(cd .libs/libCgl.lax/libCglDuplicateRow.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/.libs/libCglDuplicateRow.a)
rm -fr .libs/libCgl.lax/libCglFlowCover.a
mkdir .libs/libCgl.lax/libCglFlowCover.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/.libs/libCglFlowCover.a
(cd .libs/libCgl.lax/libCglFlowCover.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/.libs/libCglFlowCover.a)
rm -fr .libs/libCgl.lax/libCglGMI.a
mkdir .libs/libCgl.lax/libCglGMI.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI/.libs/libCglGMI.a
(cd .libs/libCgl.lax/libCglGMI.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI/.libs/libCglGMI.a)
rm -fr .libs/libCgl.lax/libCglGomory.a
mkdir .libs/libCgl.lax/libCglGomory.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory/.libs/libCglGomory.a
(cd .libs/libCgl.lax/libCglGomory.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory/.libs/libCglGomory.a)
rm -fr .libs/libCgl.lax/libCglKnapsackCover.a
mkdir .libs/libCgl.lax/libCglKnapsackCover.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/.libs/libCglKnapsackCover.a
(cd .libs/libCgl.lax/libCglKnapsackCover.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/.libs/libCglKnapsackCover.a)
rm -fr .libs/libCgl.lax/libCglLandP.a
mkdir .libs/libCgl.lax/libCglLandP.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/.libs/libCglLandP.a
(cd .libs/libCgl.lax/libCglLandP.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP/.libs/libCglLandP.a)
rm -fr .libs/libCgl.lax/libCglLiftAndProject.a
mkdir .libs/libCgl.lax/libCglLiftAndProject.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/.libs/libCglLiftAndProject.a
(cd .libs/libCgl.lax/libCglLiftAndProject.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/.libs/libCglLiftAndProject.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/.libs/libCglMixedIntegerRounding.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/.libs/libCglMixedIntegerRounding.a)
rm -fr .libs/libCgl.lax/libCglMixedIntegerRounding2.a
mkdir .libs/libCgl.lax/libCglMixedIntegerRounding2.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/.libs/libCglMixedIntegerRounding2.a
(cd .libs/libCgl.lax/libCglMixedIntegerRounding2.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/.libs/libCglMixedIntegerRounding2.a)
rm -fr .libs/libCgl.lax/libCglOddHole.a
mkdir .libs/libCgl.lax/libCglOddHole.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole/.libs/libCglOddHole.a
(cd .libs/libCgl.lax/libCglOddHole.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole/.libs/libCglOddHole.a)
rm -fr .libs/libCgl.lax/libCglPreProcess.a
mkdir .libs/libCgl.lax/libCglPreProcess.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess/.libs/libCglPreProcess.a
(cd .libs/libCgl.lax/libCglPreProcess.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess/.libs/libCglPreProcess.a)
rm -fr .libs/libCgl.lax/libCglProbing.a
mkdir .libs/libCgl.lax/libCglProbing.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/.libs/libCglProbing.a
(cd .libs/libCgl.lax/libCglProbing.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing/.libs/libCglProbing.a)
rm -fr .libs/libCgl.lax/libCglRedSplit.a
mkdir .libs/libCgl.lax/libCglRedSplit.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit/.libs/libCglRedSplit.a
(cd .libs/libCgl.lax/libCglRedSplit.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit/.libs/libCglRedSplit.a)
rm -fr .libs/libCgl.lax/libCglRedSplit2.a
mkdir .libs/libCgl.lax/libCglRedSplit2.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2/.libs/libCglRedSplit2.a
(cd .libs/libCgl.lax/libCglRedSplit2.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2/.libs/libCglRedSplit2.a)
rm -fr .libs/libCgl.lax/libCglResidualCapacity.a
mkdir .libs/libCgl.lax/libCglResidualCapacity.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity/.libs/libCglResidualCapacity.a
(cd .libs/libCgl.lax/libCglResidualCapacity.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity/.libs/libCglResidualCapacity.a)
rm -fr .libs/libCgl.lax/libCglSimpleRounding.a
mkdir .libs/libCgl.lax/libCglSimpleRounding.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding/.libs/libCglSimpleRounding.a
(cd .libs/libCgl.lax/libCglSimpleRounding.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding/.libs/libCglSimpleRounding.a)
rm -fr .libs/libCgl.lax/libCglTwomir.a
mkdir .libs/libCgl.lax/libCglTwomir.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/.libs/libCglTwomir.a
(cd .libs/libCgl.lax/libCglTwomir.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir/.libs/libCglTwomir.a)
rm -fr .libs/libCgl.lax/libCglZeroHalf.a
mkdir .libs/libCgl.lax/libCglZeroHalf.a
Extracting /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf/.libs/libCglZeroHalf.a
(cd .libs/libCgl.lax/libCglZeroHalf.a && ar x /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf/.libs/libCglZeroHalf.a)
ar cru .libs/libCgl.a  CglCutGenerator.o CglMessage.o CglStored.o CglParam.o CglTreeInfo.o  .libs/libCgl.lax/libCglAllDifferent.a/CglAllDifferent.o  .libs/libCgl.lax/libCglClique.a/CglClique.o .libs/libCgl.lax/libCglClique.a/CglCliqueTest.o .libs/libCgl.lax/libCglClique.a/CglCliqueHelper.o  .libs/libCgl.lax/libCglDuplicateRow.a/CglDuplicateRow.o  .libs/libCgl.lax/libCglFlowCover.a/CglFlowCover.o .libs/libCgl.lax/libCglFlowCover.a/CglFlowCoverTest.o  .libs/libCgl.lax/libCglGMI.a/CglGMIParam.o .libs/libCgl.lax/libCglGMI.a/CglGMI.o  .libs/libCgl.lax/libCglGomory.a/CglGomoryTest.o .libs/libCgl.lax/libCglGomory.a/CglGomory.o  .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCoverTest.o .libs/libCgl.lax/libCglKnapsackCover.a/CglKnapsackCover.o  .libs/libCgl.lax/libCglLandP.a/CglLandPTest.o .libs/libCgl.lax/libCglLandP.a/CglLandPUtils.o .libs/libCgl.lax/libCglLandP.a/CglLandPSimplex.o .libs/libCgl.lax/libCglLandP.a/CglLandPValidator.o .libs/libCgl.lax/libCglLandP.a/CglLandPMessages.o .libs/libCgl.lax/libCglLandP.a/CglLandPTabRow.o .libs/libCgl.lax/libCglLandP.a/CglLandP.o  .libs/libCgl.lax/libCglLiftAndProject.a/CglLiftAndProject.o  .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRounding.o .libs/libCgl.lax/libCglMixedIntegerRounding.a/CglMixedIntegerRoundingTest.o  .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2.o .libs/libCgl.lax/libCglMixedIntegerRounding2.a/CglMixedIntegerRounding2Test.o  .libs/libCgl.lax/libCglOddHole.a/CglOddHoleTest.o .libs/libCgl.lax/libCglOddHole.a/CglOddHole.o  .libs/libCgl.lax/libCglPreProcess.a/CglPreProcess.o  .libs/libCgl.lax/libCglProbing.a/CglProbingTest.o .libs/libCgl.lax/libCglProbing.a/CglProbing.o  .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitParam.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplit.o .libs/libCgl.lax/libCglRedSplit.a/CglRedSplitTest.o  .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Test.o .libs/libCgl.lax/libCglRedSplit2.a/CglRedSplit2Param.o  .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacityTest.o .libs/libCgl.lax/libCglResidualCapacity.a/CglResidualCapacity.o  .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRoundingTest.o .libs/libCgl.lax/libCglSimpleRounding.a/CglSimpleRounding.o  .libs/libCgl.lax/libCglTwomir.a/CglTwomirTest.o .libs/libCgl.lax/libCglTwomir.a/CglTwomir.o  .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalfTest.o .libs/libCgl.lax/libCglZeroHalf.a/CglZeroHalf.o .libs/libCgl.lax/libCglZeroHalf.a/Cgl012cut.o 
ranlib .libs/libCgl.a
rm -fr .libs/libCgl.lax
creating libCgl.la
(cd .libs && rm -f libCgl.la && ln -s ../libCgl.la libCgl.la)
make[3]: Nothing to be done for `all-am'.
Making all in SYMPHONY
Making all in src
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master.lo `test -f 'Master/master.c' || echo './'`Master/master.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master.c  -fno-common -DPIC -o libSym_la-master.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master_wrapper.lo `test -f 'Master/master_wrapper.c' || echo './'`Master/master_wrapper.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master_wrapper.c  -fno-common -DPIC -o libSym_la-master_wrapper.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master_io.lo `test -f 'Master/master_io.c' || echo './'`Master/master_io.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master_io.c  -fno-common -DPIC -o libSym_la-master_io.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master_func.lo `test -f 'Master/master_func.c' || echo './'`Master/master_func.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master_func.c  -fno-common -DPIC -o libSym_la-master_func.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master_prep.lo `test -f 'Master/master_prep.c' || echo './'`Master/master_prep.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master_prep.c  -fno-common -DPIC -o libSym_la-master_prep.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master_prep_base.lo `test -f 'Master/master_prep_base.c' || echo './'`Master/master_prep_base.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master_prep_base.c  -fno-common -DPIC -o libSym_la-master_prep_base.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-master_prep_sr.lo `test -f 'Master/master_prep_sr.c' || echo './'`Master/master_prep_sr.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Master/master_prep_sr.c  -fno-common -DPIC -o libSym_la-master_prep_sr.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-tm_func.lo `test -f 'TreeManager/tm_func.c' || echo './'`TreeManager/tm_func.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c TreeManager/tm_func.c  -fno-common -DPIC -o libSym_la-tm_func.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-tm_proccomm.lo `test -f 'TreeManager/tm_proccomm.c' || echo './'`TreeManager/tm_proccomm.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c TreeManager/tm_proccomm.c  -fno-common -DPIC -o libSym_la-tm_proccomm.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_solver.lo `test -f 'LP/lp_solver.c' || echo './'`LP/lp_solver.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_solver.c  -fno-common -DPIC -o libSym_la-lp_solver.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_varfunc.lo `test -f 'LP/lp_varfunc.c' || echo './'`LP/lp_varfunc.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_varfunc.c  -fno-common -DPIC -o libSym_la-lp_varfunc.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_rowfunc.lo `test -f 'LP/lp_rowfunc.c' || echo './'`LP/lp_rowfunc.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_rowfunc.c  -fno-common -DPIC -o libSym_la-lp_rowfunc.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_genfunc.lo `test -f 'LP/lp_genfunc.c' || echo './'`LP/lp_genfunc.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_genfunc.c  -fno-common -DPIC -o libSym_la-lp_genfunc.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_proccomm.lo `test -f 'LP/lp_proccomm.c' || echo './'`LP/lp_proccomm.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_proccomm.c  -fno-common -DPIC -o libSym_la-lp_proccomm.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_wrapper.lo `test -f 'LP/lp_wrapper.c' || echo './'`LP/lp_wrapper.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_wrapper.c  -fno-common -DPIC -o libSym_la-lp_wrapper.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_free.lo `test -f 'LP/lp_free.c' || echo './'`LP/lp_free.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_free.c  -fno-common -DPIC -o libSym_la-lp_free.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_sp.lo `test -f 'LP/lp_sp.c' || echo './'`LP/lp_sp.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_sp.c  -fno-common -DPIC -o libSym_la-lp_sp.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_heuristics.lo `test -f 'LP/lp_heuristics.c' || echo './'`LP/lp_heuristics.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_heuristics.c  -fno-common -DPIC -o libSym_la-lp_heuristics.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-lp_branch.lo `test -f 'LP/lp_branch.c' || echo './'`LP/lp_branch.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c LP/lp_branch.c  -fno-common -DPIC -o libSym_la-lp_branch.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-cg_func.lo `test -f 'CutGen/cg_func.c' || echo './'`CutGen/cg_func.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c CutGen/cg_func.c  -fno-common -DPIC -o libSym_la-cg_func.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-cg_wrapper.lo `test -f 'CutGen/cg_wrapper.c' || echo './'`CutGen/cg_wrapper.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c CutGen/cg_wrapper.c  -fno-common -DPIC -o libSym_la-cg_wrapper.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-cp_proccomm.lo `test -f 'CutPool/cp_proccomm.c' || echo './'`CutPool/cp_proccomm.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c CutPool/cp_proccomm.c  -fno-common -DPIC -o libSym_la-cp_proccomm.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-cp_func.lo `test -f 'CutPool/cp_func.c' || echo './'`CutPool/cp_func.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c CutPool/cp_func.c  -fno-common -DPIC -o libSym_la-cp_func.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-cp_wrapper.lo `test -f 'CutPool/cp_wrapper.c' || echo './'`CutPool/cp_wrapper.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c CutPool/cp_wrapper.c  -fno-common -DPIC -o libSym_la-cp_wrapper.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-timemeas.lo `test -f 'Common/timemeas.c' || echo './'`Common/timemeas.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Common/timemeas.c  -fno-common -DPIC -o libSym_la-timemeas.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-sym_qsort.lo `test -f 'Common/sym_qsort.c' || echo './'`Common/sym_qsort.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Common/sym_qsort.c  -fno-common -DPIC -o libSym_la-sym_qsort.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-proccomm.lo `test -f 'Common/proccomm.c' || echo './'`Common/proccomm.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Common/proccomm.c  -fno-common -DPIC -o libSym_la-proccomm.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-pack_cut.lo `test -f 'Common/pack_cut.c' || echo './'`Common/pack_cut.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Common/pack_cut.c  -fno-common -DPIC -o libSym_la-pack_cut.o
/bin/sh ../../libtool --tag=CC --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o libSym_la-pack_array.lo `test -f 'Common/pack_array.c' || echo './'`Common/pack_array.c
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I../include -I../include -I../Applications/USER/include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -D__OSI_CLP__ -DUSE_CGL_CUTS -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c Common/pack_array.c  -fno-common -DPIC -o libSym_la-pack_array.o
/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DSYMPHONY_BUILD  -L/opt/R/x86_64/lib -o libSym.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib  -no-undefined -version-info 9:10:6  libSym_la-master.lo libSym_la-master_wrapper.lo libSym_la-master_io.lo libSym_la-master_func.lo libSym_la-master_prep.lo libSym_la-master_prep_base.lo libSym_la-master_prep_sr.lo libSym_la-tm_func.lo libSym_la-tm_proccomm.lo libSym_la-lp_solver.lo libSym_la-lp_varfunc.lo libSym_la-lp_rowfunc.lo libSym_la-lp_genfunc.lo libSym_la-lp_proccomm.lo libSym_la-lp_wrapper.lo libSym_la-lp_free.lo libSym_la-lp_sp.lo libSym_la-lp_heuristics.lo  libSym_la-lp_branch.lo libSym_la-cg_func.lo libSym_la-cg_wrapper.lo libSym_la-cp_proccomm.lo libSym_la-cp_func.lo libSym_la-cp_wrapper.lo libSym_la-timemeas.lo libSym_la-sym_qsort.lo libSym_la-proccomm.lo libSym_la-pack_cut.lo libSym_la-pack_array.lo /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   
mkdir .libs
ar cru .libs/libSym.a  libSym_la-master.o libSym_la-master_wrapper.o libSym_la-master_io.o libSym_la-master_func.o libSym_la-master_prep.o libSym_la-master_prep_base.o libSym_la-master_prep_sr.o libSym_la-tm_func.o libSym_la-tm_proccomm.o libSym_la-lp_solver.o libSym_la-lp_varfunc.o libSym_la-lp_rowfunc.o libSym_la-lp_genfunc.o libSym_la-lp_proccomm.o libSym_la-lp_wrapper.o libSym_la-lp_free.o libSym_la-lp_sp.o libSym_la-lp_heuristics.o libSym_la-lp_branch.o libSym_la-cg_func.o libSym_la-cg_wrapper.o libSym_la-cp_proccomm.o libSym_la-cp_func.o libSym_la-cp_wrapper.o libSym_la-timemeas.o libSym_la-sym_qsort.o libSym_la-proccomm.o libSym_la-pack_cut.o libSym_la-pack_array.o
ranlib .libs/libSym.a
creating libSym.la
(cd .libs && rm -f libSym.la && ln -s ../libSym.la libSym.la)
clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo ../include` -I`echo ../include` -I`echo ../Applications/USER/include`  -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglClique -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglFlowCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGMI -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglGomory -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLandP -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglOddHole -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglPreProcess -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglProbing -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglRedSplit2 -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglResidualCapacity -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglSimpleRounding -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglTwomir -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/CglZeroHalf -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src  -D__OSI_CLP__        -DUSE_CGL_CUTS          -DSIGHANDLER -DHAS_RANDOM -DHAS_SRANDOM -D__NONE__ -D__DARWIN -DCOMPILE_IN_CG -DCOMPILE_IN_CP -DCOMPILE_IN_LP -DCOMPILE_IN_TM -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o symphony-main.o `test -f 'Master/main.c' || echo './'`Master/main.c
/bin/sh ../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DSYMPHONY_BUILD  -L/opt/R/x86_64/lib -o symphony -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib  symphony-main.o libSym.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm   
clang++ -arch x86_64 -std=gnu++14 -w -g -O2 -DSYMPHONY_BUILD -o symphony symphony-main.o -framework Accelerate -framework Accelerate -framework Accelerate -Wl,-bind_at_load  -L/opt/R/x86_64/lib ./.libs/libSym.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/.libs/libCgl.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/.libs/libOsiClp.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClpSolver.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/.libs/libClp.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/.libs/libOsi.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/.libs/libCoinUtils.a -lm
Making all in src/OsiSym
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o OsiSymSolverInterface.lo OsiSymSolverInterface.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c OsiSymSolverInterface.cpp  -fno-common -DPIC -o OsiSymSolverInterface.o
/bin/sh ../../../libtool --tag=CXX --mode=compile clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I`echo .` -I../../inc  -I`echo ./../../include` -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include  -w -g -O2   -DSYMPHONY_BUILD -c -o SymWarmStart.lo SymWarmStart.cpp
 clang++ -arch x86_64 -std=gnu++14 -DHAVE_CONFIG_H -I. -I. -I../../inc -I./../../include -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi -I/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src -I/opt/R/x86_64/include -w -g -O2 -DSYMPHONY_BUILD -c SymWarmStart.cpp  -fno-common -DPIC -o SymWarmStart.o
/bin/sh ../../../libtool --tag=CXX --mode=link clang++ -arch x86_64 -std=gnu++14  -w -g -O2   -DSYMPHONY_BUILD  -L/opt/R/x86_64/lib -o libOsiSym.la -rpath /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib -no-undefined -version-info 9:10:6 OsiSymSolverInterface.lo SymWarmStart.lo /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/src/libCgl.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/OsiClp/libOsiClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClpSolver.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/src/libClp.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/src/Osi/libOsi.la /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/src/libCoinUtils.la -framework Accelerate -lm  ../libSym.la 
mkdir .libs
ar cru .libs/libOsiSym.a  OsiSymSolverInterface.o SymWarmStart.o
ranlib .libs/libOsiSym.a
creating libOsiSym.la
(cd .libs && rm -f libOsiSym.la && ln -s ../libOsiSym.la libOsiSym.la)
make[3]: Nothing to be done for `all-am'.
make[2]: Nothing to be done for `all-am'.
Making install in CoinUtils
Making install in src
/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -c -m 644 config_coinutils.h /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinUtilsConfig.h
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libCoinUtils.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la'
/usr/bin/install -c .libs/libCoinUtils.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.la
/usr/bin/install -c .libs/libCoinUtils.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinAlloc.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinPresolvePsdebug.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCoinUtils.a(CoinWarmStartVector.o) has no symbols
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Coin_C_defines.h' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Coin_C_defines.h'
 /usr/bin/install -c -m 644 'CoinAlloc.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinAlloc.hpp'
 /usr/bin/install -c -m 644 'CoinBuild.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinBuild.hpp'
 /usr/bin/install -c -m 644 'CoinDenseVector.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinDenseVector.hpp'
 /usr/bin/install -c -m 644 'CoinDistance.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinDistance.hpp'
 /usr/bin/install -c -m 644 'CoinError.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinError.hpp'
 /usr/bin/install -c -m 644 'CoinFactorization.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinSimpFactorization.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSimpFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinDenseFactorization.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinDenseFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinOslFactorization.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinOslFactorization.hpp'
 /usr/bin/install -c -m 644 'CoinFileIO.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFileIO.hpp'
 /usr/bin/install -c -m 644 'CoinFinite.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFinite.hpp'
 /usr/bin/install -c -m 644 'CoinFloatEqual.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinFloatEqual.hpp'
 /usr/bin/install -c -m 644 'CoinHelperFunctions.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinHelperFunctions.hpp'
 /usr/bin/install -c -m 644 'CoinIndexedVector.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinIndexedVector.hpp'
 /usr/bin/install -c -m 644 'CoinLpIO.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinLpIO.hpp'
 /usr/bin/install -c -m 644 'CoinMessage.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinMessage.hpp'
 /usr/bin/install -c -m 644 'CoinMessageHandler.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinMessageHandler.hpp'
 /usr/bin/install -c -m 644 'CoinModel.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinModel.hpp'
 /usr/bin/install -c -m 644 'CoinStructuredModel.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinStructuredModel.hpp'
 /usr/bin/install -c -m 644 'CoinModelUseful.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinModelUseful.hpp'
 /usr/bin/install -c -m 644 'CoinMpsIO.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinMpsIO.hpp'
 /usr/bin/install -c -m 644 'CoinPackedMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVector.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinPackedVectorBase.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPackedVectorBase.hpp'
 /usr/bin/install -c -m 644 'CoinParam.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinParam.hpp'
 /usr/bin/install -c -m 644 'CoinPragma.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPragma.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDoubleton.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDoubleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDual.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDual.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveDupcol.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveDupcol.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveEmpty.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveEmpty.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveFixed.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveFixed.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveForcing.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveForcing.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveImpliedFree.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveImpliedFree.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveIsolated.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveIsolated.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMatrix.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveMonitor.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveMonitor.hpp'
 /usr/bin/install -c -m 644 'CoinPresolvePsdebug.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolvePsdebug.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSingleton.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSingleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveSubst.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveSubst.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTighten.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTighten.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveTripleton.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveTripleton.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveUseless.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveUseless.hpp'
 /usr/bin/install -c -m 644 'CoinPresolveZeros.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinPresolveZeros.hpp'
 /usr/bin/install -c -m 644 'CoinRational.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinRational.hpp'
 /usr/bin/install -c -m 644 'CoinSearchTree.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSearchTree.hpp'
 /usr/bin/install -c -m 644 'CoinShallowPackedVector.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinShallowPackedVector.hpp'
 /usr/bin/install -c -m 644 'CoinSignal.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSignal.hpp'
 /usr/bin/install -c -m 644 'CoinSmartPtr.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSmartPtr.hpp'
 /usr/bin/install -c -m 644 'CoinSnapshot.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSnapshot.hpp'
 /usr/bin/install -c -m 644 'CoinSort.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinSort.hpp'
 /usr/bin/install -c -m 644 'CoinTime.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinTime.hpp'
 /usr/bin/install -c -m 644 'CoinTypes.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinTypes.hpp'
 /usr/bin/install -c -m 644 'CoinUtility.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinUtility.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStart.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStart.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartBasis.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartBasis.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartVector.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartVector.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartDual.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartDual.hpp'
 /usr/bin/install -c -m 644 'CoinWarmStartPrimalDual.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CoinWarmStartPrimalDual.hpp'
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/CoinUtils/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'coinutils.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/coinutils.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/usr/local/opt/mysql-client/lib/pkgconfig:/usr/local/lib/openbabel3/pkgconfig:/opt/R/x86_64/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	"pkg-config" --libs coinutils > /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/CoinUtils/coinutils_addlibs.txt
Making install in Osi
Making install in src/Osi
/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -c -m 644 config_osi.h /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiConfig.h
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsi.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.la'
/usr/bin/install -c .libs/libOsi.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.la
/usr/bin/install -c .libs/libOsi.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsi.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiAuxInfo.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiAuxInfo.hpp'
 /usr/bin/install -c -m 644 'OsiBranchingObject.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiBranchingObject.hpp'
 /usr/bin/install -c -m 644 'OsiChooseVariable.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiChooseVariable.hpp'
 /usr/bin/install -c -m 644 'OsiColCut.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiColCut.hpp'
 /usr/bin/install -c -m 644 'OsiCollections.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiCollections.hpp'
 /usr/bin/install -c -m 644 'OsiCut.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiCut.hpp'
 /usr/bin/install -c -m 644 'OsiCuts.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiCuts.hpp'
 /usr/bin/install -c -m 644 'OsiPresolve.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiPresolve.hpp'
 /usr/bin/install -c -m 644 'OsiRowCut.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiRowCut.hpp'
 /usr/bin/install -c -m 644 'OsiRowCutDebugger.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiRowCutDebugger.hpp'
 /usr/bin/install -c -m 644 'OsiSolverBranch.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSolverBranch.hpp'
 /usr/bin/install -c -m 644 'OsiSolverInterface.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSolverParameters.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSolverParameters.hpp'
Making install in src/OsiCommonTest
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiCommonTests.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la'
/usr/bin/install -c .libs/libOsiCommonTests.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.la
/usr/bin/install -c .libs/libOsiCommonTests.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiCommonTests.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiUnitTests.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiUnitTests.hpp'
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Osi/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'osi.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi.pc'
 /usr/bin/install -c -m 644 'osi-unittests.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-unittests.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/usr/local/opt/mysql-client/lib/pkgconfig:/usr/local/lib/openbabel3/pkgconfig:/opt/R/x86_64/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs osi > /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Osi/osi_addlibs.txt
Making install in Clp
Making install in src
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libClp.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.la'
/usr/bin/install -c .libs/libClp.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.la
/usr/bin/install -c .libs/libClp.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClp.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libClpSolver.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.la'
/usr/bin/install -c .libs/libClpSolver.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.la
/usr/bin/install -c .libs/libClpSolver.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libClpSolver.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin"
  /bin/sh ../../libtool --mode=install /usr/bin/install -c 'clp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin/clp'
/usr/bin/install -c clp /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin/clp
/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -c -m 644 config_clp.h /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConfig.h
make  install-exec-hook
make[5]: Nothing to be done for `install-exec-hook'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'Clp_C_Interface.h' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Clp_C_Interface.h'
 /usr/bin/install -c -m 644 'ClpCholeskyBase.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyBase.hpp'
 /usr/bin/install -c -m 644 'ClpCholeskyDense.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpCholeskyDense.hpp'
 /usr/bin/install -c -m 644 'ClpConstraint.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConstraint.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintLinear.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintLinear.hpp'
 /usr/bin/install -c -m 644 'ClpConstraintQuadratic.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpConstraintQuadratic.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowDantzig.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowPivot.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowPivot.hpp'
 /usr/bin/install -c -m 644 'ClpDualRowSteepest.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDualRowSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpDummyMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDummyMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicExampleMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicExampleMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpDynamicMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpEventHandler.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpEventHandler.hpp'
 /usr/bin/install -c -m 644 'ClpFactorization.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpFactorization.hpp'
 /usr/bin/install -c -m 644 'ClpGubDynamicMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpGubDynamicMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpGubMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpGubMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpInterior.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpInterior.hpp'
 /usr/bin/install -c -m 644 'ClpLinearObjective.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpLinearObjective.hpp'
 /usr/bin/install -c -m 644 'ClpMatrixBase.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpMatrixBase.hpp'
 /usr/bin/install -c -m 644 'ClpMessage.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpMessage.hpp'
 /usr/bin/install -c -m 644 'ClpModel.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpModel.hpp'
 /usr/bin/install -c -m 644 'ClpNetworkMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpNetworkMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpNonLinearCost.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpNonLinearCost.hpp'
 /usr/bin/install -c -m 644 'ClpNode.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpNode.hpp'
 /usr/bin/install -c -m 644 'ClpObjective.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpObjective.hpp'
 /usr/bin/install -c -m 644 'ClpPackedMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPackedMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpPdcoBase.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPdcoBase.hpp'
 /usr/bin/install -c -m 644 'ClpPlusMinusOneMatrix.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPlusMinusOneMatrix.hpp'
 /usr/bin/install -c -m 644 'ClpParameters.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpParameters.hpp'
 /usr/bin/install -c -m 644 'ClpPresolve.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPresolve.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnDantzig.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnDantzig.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnPivot.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnPivot.hpp'
 /usr/bin/install -c -m 644 'ClpPrimalColumnSteepest.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpPrimalColumnSteepest.hpp'
 /usr/bin/install -c -m 644 'ClpQuadraticObjective.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpQuadraticObjective.hpp'
 /usr/bin/install -c -m 644 'ClpSimplex.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplex.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexNonlinear.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexNonlinear.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexOther.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexOther.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexDual.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexDual.hpp'
 /usr/bin/install -c -m 644 'ClpSimplexPrimal.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSimplexPrimal.hpp'
 /usr/bin/install -c -m 644 'ClpSolve.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/ClpSolve.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.hpp'
 /usr/bin/install -c -m 644 'Idiot.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Idiot.hpp'
 /usr/bin/install -c -m 644 'CbcOrClpParam.cpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CbcOrClpParam.cpp'
Making install in src/OsiClp
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiClp.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.la'
/usr/bin/install -c .libs/libOsiClp.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.la
/usr/bin/install -c .libs/libOsiClp.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiClp.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiClpSolverInterface.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiClpSolverInterface.hpp'
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Clp/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'clp.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/clp.pc'
 /usr/bin/install -c -m 644 'osi-clp.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-clp.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/usr/local/opt/mysql-client/lib/pkgconfig:/usr/local/lib/openbabel3/pkgconfig:/opt/R/x86_64/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs clp > /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Clp/clp_addlibs.txt
Making install in Cgl
Making install in src
Making install in CglAllDifferent
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglAllDifferent.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglAllDifferent.hpp'
Making install in CglClique
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglClique.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglClique.hpp'
Making install in CglDuplicateRow
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglDuplicateRow.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglDuplicateRow.hpp'
Making install in CglFlowCover
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglFlowCover.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglFlowCover.hpp'
Making install in CglGMI
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGMI.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglGMI.hpp'
 /usr/bin/install -c -m 644 'CglGMIParam.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglGMIParam.hpp'
Making install in CglGomory
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglGomory.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglGomory.hpp'
Making install in CglKnapsackCover
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglKnapsackCover.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglKnapsackCover.hpp'
Making install in CglLandP
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLandP.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglLandP.hpp'
 /usr/bin/install -c -m 644 'CglLandPValidator.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglLandPValidator.hpp'
Making install in CglLiftAndProject
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglLiftAndProject.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglLiftAndProject.hpp'
Making install in CglMixedIntegerRounding
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding.hpp'
Making install in CglMixedIntegerRounding2
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglMixedIntegerRounding2.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglMixedIntegerRounding2.hpp'
Making install in CglOddHole
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglOddHole.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglOddHole.hpp'
Making install in CglPreProcess
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglPreProcess.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglPreProcess.hpp'
Making install in CglProbing
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglProbing.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglProbing.hpp'
Making install in CglRedSplit
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit.hpp'
 /usr/bin/install -c -m 644 'CglRedSplitParam.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplitParam.hpp'
Making install in CglRedSplit2
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglRedSplit2.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2.hpp'
 /usr/bin/install -c -m 644 'CglRedSplit2Param.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglRedSplit2Param.hpp'
Making install in CglResidualCapacity
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglResidualCapacity.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglResidualCapacity.hpp'
Making install in CglSimpleRounding
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglSimpleRounding.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglSimpleRounding.hpp'
Making install in CglTwomir
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglTwomir.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglTwomir.hpp'
Making install in CglZeroHalf
make[5]: Nothing to be done for `install-exec-am'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglZeroHalf.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglZeroHalf.hpp'
 /usr/bin/install -c -m 644 'Cgl012cut.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/Cgl012cut.hpp'
/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -c -m 644 config_cgl.h /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglConfig.h
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libCgl.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.la'
/usr/bin/install -c .libs/libCgl.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.la
/usr/bin/install -c .libs/libCgl.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libCgl.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'CglCutGenerator.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglCutGenerator.hpp'
 /usr/bin/install -c -m 644 'CglMessage.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglMessage.hpp'
 /usr/bin/install -c -m 644 'CglStored.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglStored.hpp'
 /usr/bin/install -c -m 644 'CglParam.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglParam.hpp'
 /usr/bin/install -c -m 644 'CglTreeInfo.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/CglTreeInfo.hpp'
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/Cgl/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'cgl.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/cgl.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/usr/local/opt/mysql-client/lib/pkgconfig:/usr/local/lib/openbabel3/pkgconfig:/opt/R/x86_64/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs cgl > /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/Cgl/cgl_addlibs.txt
Making install in SYMPHONY
Making install in src
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../libtool --mode=install /usr/bin/install -c  'libSym.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.la'
/usr/bin/install -c .libs/libSym.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.la
/usr/bin/install -c .libs/libSym.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libSym.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin"
  /bin/sh ../../libtool --mode=install /usr/bin/install -c 'symphony' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin/symphony'
/usr/bin/install -c symphony /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/bin/symphony
/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -c -m 644 ../include/config_sym.h /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/SymConfig.h
make  install-exec-hook
make[5]: Nothing to be done for `install-exec-hook'.
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 '../include/symphony.h' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/symphony.h'
Making install in src/OsiSym
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib"
 /bin/sh ../../../libtool --mode=install /usr/bin/install -c  'libOsiSym.la' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.la'
/usr/bin/install -c .libs/libOsiSym.lai /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.la
/usr/bin/install -c .libs/libOsiSym.a /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
chmod 644 /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
ranlib /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/libOsiSym.a
----------------------------------------------------------------------
Libraries have been installed in:
   /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
     during execution

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin"
 /usr/bin/install -c -m 644 'OsiSymSolverInterface.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverInterface.hpp'
 /usr/bin/install -c -m 644 'OsiSymSolverParameters.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/OsiSymSolverParameters.hpp'
 /usr/bin/install -c -m 644 'SymWarmStart.hpp' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/include/coin/SymWarmStart.hpp'
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY"
for file in README AUTHORS LICENSE ; do \
	  if test -f "$file"; then dir=; else dir="./"; fi; \
	  if test -f "$dir$file"; then /usr/bin/install -c -m 644 "$dir$file" "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/$file"; fi; \
	done 
test -z "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig" || /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/SYMPHONY/install-sh -d "/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig"
 /usr/bin/install -c -m 644 'symphony.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony.pc'
 /usr/bin/install -c -m 644 'symphony-app.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/symphony-app.pc'
 /usr/bin/install -c -m 644 'osi-sym.pc' '/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig/osi-sym.pc'
make  install-data-hook
PKG_CONFIG_PATH=/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib64/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/pkgconfig::/usr/local/opt/mysql-client/lib/pkgconfig:/usr/local/lib/openbabel3/pkgconfig:/opt/R/x86_64/lib/pkgconfig:/Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/lib/pkgconfig \
	pkg-config --libs symphony > /Users/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/coin/doc/SYMPHONY/sym_addlibs.txt
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
touch SYMPHONY.ts
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -ISYMPHONY/include  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c lp_symphony.cc -o lp_symphony.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o lpsymphony.so lp_symphony.o -LSYMPHONY/lib -lSym -lCgl -lOsiClp -lClp -lOsi -lCoinUtils -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/00LOCK-lpsymphony/00new/lpsymphony/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lpsymphony)

R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(lpsymphony)
> 
> test_check("lpsymphony")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
  1.262   0.189   1.518