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This page was generated on 2023-11-02 11:40:52 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1116/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lpsymphony 1.30.0  (landing page)
Vladislav Kim
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/lpsymphony
git_branch: RELEASE_3_18
git_last_commit: 9925803
git_last_commit_date: 2023-10-24 10:46:47 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for lpsymphony on kunpeng2


To the developers/maintainers of the lpsymphony package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lpsymphony.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: lpsymphony
Version: 1.30.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony
StartedAt: 2023-11-02 02:44:41 -0000 (Thu, 02 Nov 2023)
EndedAt: 2023-11-02 02:44:44 -0000 (Thu, 02 Nov 2023)
EllapsedTime: 3.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony
###
##############################################################################
##############################################################################


* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* preparing ‘lpsymphony’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘lpsymphony’ ...
** using staged installation
CXX is g++ -std=gnu++17
CXX is g++ -std=gnu++14
configure: loading site script /home/biocbuild/tmp/RtmpU6tTbH/Rbuild3c1047262cd7d4/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... ./config.guess: unable to guess system type

This script, last modified 2007-05-17, has failed to recognize
the operating system you are using. It is advised that you
download the most up to date version of the config scripts from

  http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.guess
and
  http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.sub

If the version you run (./config.guess) is already up to date, please
send the following data and any information you think might be
pertinent to <config-patches@gnu.org> in order to provide the needed
information to handle your system.

config.guess timestamp = 2007-05-17

uname -m = aarch64
uname -r = 5.10.0-136.31.0.107.oe2203sp1.aarch64
uname -s = Linux
uname -v = #1 SMP Thu May 11 10:47:00 CST 2023

/usr/bin/uname -p = aarch64
/bin/uname -X     = 

hostinfo               = 
/bin/universe          = 
/usr/bin/arch -k       = 
/bin/arch              = aarch64
/usr/bin/oslevel       = 
/usr/convex/getsysinfo = 

UNAME_MACHINE = aarch64
UNAME_RELEASE = 5.10.0-136.31.0.107.oe2203sp1.aarch64
UNAME_SYSTEM  = Linux
UNAME_VERSION = #1 SMP Thu May 11 10:47:00 CST 2023
configure: error: cannot guess build type; you must specify one
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/tmp/RtmpU6tTbH/Rbuild3c1047262cd7d4/lpsymphony/src/SYMPHONY'
make[1]: *** No targets specified and no makefile found.  Stop.
make[1]: Leaving directory '/home/biocbuild/tmp/RtmpU6tTbH/Rbuild3c1047262cd7d4/lpsymphony/src/SYMPHONY'
make: *** [Makevars:14: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’
* removing ‘/home/biocbuild/tmp/RtmpU6tTbH/Rinst3c104719d9b1ea/lpsymphony’
      -----------------------------------
ERROR: package installation failed