Britta Velten
| Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_18 |
| git_last_commit: eea1fd2 |
| git_last_commit_date: 2023-10-24 11:10:07 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:36:00 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 896/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.18.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings graper_1.18.0.tar.gz |
| StartedAt: 2024-04-15 23:28:57 -0400 (Mon, 15 Apr 2024) |
| EndedAt: 2024-04-15 23:30:42 -0400 (Mon, 15 Apr 2024) |
| EllapsedTime: 104.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings graper_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/graper.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
libs 6.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘example_linear.Rmd’ using ‘UTF-8’... OK
‘example_logistic.Rmd’ using ‘UTF-8’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.18-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from /home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:15,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
/home/biocbuild/bbs-3.18-bioc/R/site-library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
| ^~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.18-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.18-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.18-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-878.217
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-566.818
ELB improved by 311.4
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-504.422
ELB improved by 62.3955
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.356
ELB improved by 36.0662
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.24
ELB improved by 16.1163
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.559
ELB improved by 7.68016
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.832
ELB improved by 5.72777
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.053
ELB improved by 5.77894
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.366
ELB improved by 6.68637
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.409
ELB improved by 7.95781
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.645
ELB improved by 8.76397
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.536
ELB improved by 8.10892
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.431
ELB improved by 6.10443
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.442
ELB improved by 3.98916
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.954
ELB improved by 2.4876
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.387
ELB improved by 1.56737
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.353
ELB improved by 1.03394
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.618
ELB improved by 0.735339
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.046
ELB improved by 0.571976
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.561
ELB improved by 0.484921
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.118
ELB improved by 0.442456
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.69
ELB improved by 0.428766
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.254
ELB improved by 0.436027
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.796
ELB improved by 0.458039
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.311
ELB improved by 0.484843
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.806
ELB improved by 0.505016
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.289
ELB improved by 0.516818
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.761
ELB improved by 0.528132
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.215
ELB improved by 0.546205
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.639
ELB improved by 0.575979
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.018
ELB improved by 0.620646
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.344
ELB improved by 0.674319
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.627
ELB improved by 0.717038
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.892
ELB improved by 0.734273
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.162
ELB improved by 0.730224
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.451
ELB improved by 0.711023
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.772
ELB improved by 0.679253
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.131
ELB improved by 0.641247
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.515
ELB improved by 0.61566
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.87
ELB improved by 0.645197
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.109
ELB improved by 0.760449
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.302
ELB improved by 0.807624
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.628
ELB improved by 0.67325
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.136
ELB improved by 0.492183
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.79
ELB improved by 0.346593
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.548
ELB improved by 0.241579
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.379
ELB improved by 0.169184
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.256
ELB improved by 0.122779
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.161
ELB improved by 0.095057
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.081
ELB improved by 0.0800865
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.007
ELB improved by 0.0743799
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.93
ELB improved by 0.0766978
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.843
ELB improved by 0.0870574
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.739
ELB improved by 0.104025
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.619
ELB improved by 0.119812
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.498
ELB improved by 0.120739
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.396
ELB improved by 0.102137
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.321
ELB improved by 0.0755749
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.267
ELB improved by 0.0531858
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.229
ELB improved by 0.0381472
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.201
ELB improved by 0.0286312
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.178
ELB improved by 0.0223309
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.16
ELB improved by 0.0178422
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.146
ELB improved by 0.014499
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.134
ELB improved by 0.0119792
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.124
ELB improved by 0.010081
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.115
ELB improved by 0.00864842
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-887.353
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-583.794
ELB improved by 303.559
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.972
ELB improved by 64.8223
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.981
ELB improved by 43.9905
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.016
ELB improved by 20.9655
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.233
ELB improved by 9.78281
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.473
ELB improved by 6.75988
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.506
ELB improved by 5.96685
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.63
ELB improved by 5.87589
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.664
ELB improved by 5.96591
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.768
ELB improved by 5.89681
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.363
ELB improved by 5.40459
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.953
ELB improved by 4.4096
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.788
ELB improved by 3.16586
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.702
ELB improved by 2.08507
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.345
ELB improved by 1.35695
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.425
ELB improved by 0.920225
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.768
ELB improved by 0.656854
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.28
ELB improved by 0.48882
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.9
ELB improved by 0.379328
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.59
ELB improved by 0.309917
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.323
ELB improved by 0.26698
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.084
ELB improved by 0.239652
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.863
ELB improved by 0.220296
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.659
ELB improved by 0.204651
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.467
ELB improved by 0.191454
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.286
ELB improved by 0.181074
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.112
ELB improved by 0.173885
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.943
ELB improved by 0.169622
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.775
ELB improved by 0.16764
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.608
ELB improved by 0.167262
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.44
ELB improved by 0.167911
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.271
ELB improved by 0.169095
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.1
ELB improved by 0.170369
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.929
ELB improved by 0.171328
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.758
ELB improved by 0.17161
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.587
ELB improved by 0.170928
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.418
ELB improved by 0.16909
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.251
ELB improved by 0.16601
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.09
ELB improved by 0.161693
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.934
ELB improved by 0.156215
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.784
ELB improved by 0.149698
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.642
ELB improved by 0.142294
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.507
ELB improved by 0.134176
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.382
ELB improved by 0.125537
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.265
ELB improved by 0.116588
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.158
ELB improved by 0.107547
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.059
ELB improved by 0.0986243
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.969
ELB improved by 0.0900039
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.887
ELB improved by 0.081832
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.813
ELB improved by 0.0742086
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.746
ELB improved by 0.0671896
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.685
ELB improved by 0.0607934
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.63
ELB improved by 0.05501
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.58
ELB improved by 0.0498106
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.535
ELB improved by 0.0451544
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.494
ELB improved by 0.0409954
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.457
ELB improved by 0.0372858
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.423
ELB improved by 0.0339791
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.392
ELB improved by 0.0310317
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.363
ELB improved by 0.0284035
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.337
ELB improved by 0.0260581
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.313
ELB improved by 0.0239632
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.291
ELB improved by 0.0220902
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.271
ELB improved by 0.0204137
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.252
ELB improved by 0.0189115
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.234
ELB improved by 0.0175639
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.218
ELB improved by 0.016354
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.203
ELB improved by 0.0152665
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.189
ELB improved by 0.0142882
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.175
ELB improved by 0.0134075
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.162
ELB improved by 0.0126139
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.151
ELB improved by 0.0118984
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.139
ELB improved by 0.0112529
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.129
ELB improved by 0.0106702
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.119
ELB improved by 0.0101439
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.109
ELB improved by 0.00966837
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-873.422
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.485
ELB improved by 290.937
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-523.987
ELB improved by 58.4983
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.453
ELB improved by 38.5335
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.531
ELB improved by 16.922
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.679
ELB improved by 6.85211
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.329
ELB improved by 4.34997
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.472
ELB improved by 3.85761
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.665
ELB improved by 3.80659
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.833
ELB improved by 3.83245
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.08
ELB improved by 3.75281
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.653
ELB improved by 3.42687
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.828
ELB improved by 2.8253
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.744
ELB improved by 2.08403
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.339
ELB improved by 1.40495
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.432
ELB improved by 0.906982
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.839
ELB improved by 0.59298
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.429
ELB improved by 0.409873
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.124
ELB improved by 0.304468
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.883
ELB improved by 0.241634
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.681
ELB improved by 0.201801
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.506
ELB improved by 0.174776
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.351
ELB improved by 0.155307
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.21
ELB improved by 0.140625
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.081
ELB improved by 0.1292
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.961
ELB improved by 0.120131
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.848
ELB improved by 0.112851
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.741
ELB improved by 0.106976
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.639
ELB improved by 0.102234
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.54
ELB improved by 0.0984206
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.445
ELB improved by 0.0953767
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.352
ELB improved by 0.0929768
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.261
ELB improved by 0.0911199
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.171
ELB improved by 0.0897237
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.082
ELB improved by 0.0887228
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.994
ELB improved by 0.0880669
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.907
ELB improved by 0.087722
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.819
ELB improved by 0.0876729
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.731
ELB improved by 0.0879292
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.642
ELB improved by 0.0885369
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.553
ELB improved by 0.0895988
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.462
ELB improved by 0.0913145
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.367
ELB improved by 0.0940578
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.269
ELB improved by 0.0985336
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.163
ELB improved by 0.10609
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.044
ELB improved by 0.119287
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.901
ELB improved by 0.142584
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.719
ELB improved by 0.181535
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.484
ELB improved by 0.235583
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.198
ELB improved by 0.285582
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.893
ELB improved by 0.305158
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.596
ELB improved by 0.296793
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.312
ELB improved by 0.284185
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.031
ELB improved by 0.280881
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.742
ELB improved by 0.288963
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.434
ELB improved by 0.308589
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.092
ELB improved by 0.341835
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.7
ELB improved by 0.391829
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.244
ELB improved by 0.456352
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.725
ELB improved by 0.518948
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.165
ELB improved by 0.559661
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.588
ELB improved by 0.577554
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.009
ELB improved by 0.578928
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.447
ELB improved by 0.561761
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.924
ELB improved by 0.522593
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.46
ELB improved by 0.463886
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.067
ELB improved by 0.393521
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.746
ELB improved by 0.320851
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.493
ELB improved by 0.253303
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.298
ELB improved by 0.19508
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.15
ELB improved by 0.147574
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.04
ELB improved by 0.110417
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.957
ELB improved by 0.082372
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.895
ELB improved by 0.061862
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.848
ELB improved by 0.0472629
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.811
ELB improved by 0.0370708
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.781
ELB improved by 0.0300053
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.756
ELB improved by 0.0250547
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.735
ELB improved by 0.0214691
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.716
ELB improved by 0.0187273
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.699
ELB improved by 0.0164923
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.685
ELB improved by 0.014568
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.672
ELB improved by 0.0128585
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.661
ELB improved by 0.0113292
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.651
ELB improved by 0.00997509
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-889.24
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-592.016
ELB improved by 297.224
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-530.298
ELB improved by 61.718
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.48
ELB improved by 47.8176
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.617
ELB improved by 25.8633
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.108
ELB improved by 11.5086
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.547
ELB improved by 6.56095
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.782
ELB improved by 4.76504
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.641
ELB improved by 4.14102
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.581
ELB improved by 4.05981
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.424
ELB improved by 4.1575
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.216
ELB improved by 4.20788
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.188
ELB improved by 4.02844
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.729
ELB improved by 3.45866
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.171
ELB improved by 2.5585
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.486
ELB improved by 1.68482
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.422
ELB improved by 1.06372
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.733
ELB improved by 0.689337
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.256
ELB improved by 0.476474
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.902
ELB improved by 0.353826
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.623
ELB improved by 0.279472
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.391
ELB improved by 0.231451
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.193
ELB improved by 0.198423
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.019
ELB improved by 0.174351
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.863
ELB improved by 0.155881
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.722
ELB improved by 0.141072
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.593
ELB improved by 0.12876
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.475
ELB improved by 0.118232
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.366
ELB improved by 0.109035
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.265
ELB improved by 0.100877
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.171
ELB improved by 0.0935635
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.084
ELB improved by 0.0869602
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.003
ELB improved by 0.0809698
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.928
ELB improved by 0.0755187
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.857
ELB improved by 0.0705485
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.791
ELB improved by 0.0660107
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.729
ELB improved by 0.0618636
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.671
ELB improved by 0.0580708
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.617
ELB improved by 0.0545997
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.565
ELB improved by 0.0514212
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.517
ELB improved by 0.0485091
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.471
ELB improved by 0.0458395
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.428
ELB improved by 0.0433914
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.386
ELB improved by 0.0411453
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.347
ELB improved by 0.0390841
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.31
ELB improved by 0.0371922
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.275
ELB improved by 0.0354558
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.241
ELB improved by 0.0338623
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.208
ELB improved by 0.0324006
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.177
ELB improved by 0.0310607
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.147
ELB improved by 0.0298335
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.119
ELB improved by 0.028711
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.091
ELB improved by 0.0276859
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.064
ELB improved by 0.0267516
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.038
ELB improved by 0.0259022
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.013
ELB improved by 0.0251323
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.989
ELB improved by 0.024437
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.965
ELB improved by 0.023812
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.942
ELB improved by 0.023253
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.919
ELB improved by 0.0227565
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.897
ELB improved by 0.0223191
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.875
ELB improved by 0.0219377
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.853
ELB improved by 0.0216095
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.832
ELB improved by 0.0213319
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.811
ELB improved by 0.0211027
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.79
ELB improved by 0.0209197
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.769
ELB improved by 0.020781
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.748
ELB improved by 0.0206848
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.728
ELB improved by 0.0206295
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.707
ELB improved by 0.0206138
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.686
ELB improved by 0.0206361
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.666
ELB improved by 0.0206952
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.645
ELB improved by 0.02079
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.624
ELB improved by 0.0209191
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.603
ELB improved by 0.0210813
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.582
ELB improved by 0.0212755
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.56
ELB improved by 0.0215002
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.538
ELB improved by 0.021754
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.516
ELB improved by 0.0220353
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.494
ELB improved by 0.0223423
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.471
ELB improved by 0.0226729
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.448
ELB improved by 0.0230248
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.425
ELB improved by 0.0233953
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.401
ELB improved by 0.0237814
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.377
ELB improved by 0.0241798
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.352
ELB improved by 0.0245866
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.327
ELB improved by 0.0249977
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.302
ELB improved by 0.0254085
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.276
ELB improved by 0.0258143
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.25
ELB improved by 0.0262099
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.223
ELB improved by 0.0265899
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.196
ELB improved by 0.026949
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.169
ELB improved by 0.0272819
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.142
ELB improved by 0.0275834
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.114
ELB improved by 0.0278489
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.086
ELB improved by 0.028074
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.057
ELB improved by 0.028255
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.029
ELB improved by 0.028389
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.001
ELB improved by 0.0284737
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.972
ELB improved by 0.0285071
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.944
ELB improved by 0.0284879
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.915
ELB improved by 0.0284145
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.887
ELB improved by 0.0282855
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.859
ELB improved by 0.0280987
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.831
ELB improved by 0.0278511
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.803
ELB improved by 0.027539
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.776
ELB improved by 0.0271583
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.75
ELB improved by 0.026705
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.723
ELB improved by 0.0261763
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.698
ELB improved by 0.0255714
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.673
ELB improved by 0.0248927
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.649
ELB improved by 0.024146
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.625
ELB improved by 0.023341
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.603
ELB improved by 0.0224898
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.581
ELB improved by 0.0216065
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.561
ELB improved by 0.0207052
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.541
ELB improved by 0.0197992
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.522
ELB improved by 0.0189
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.504
ELB improved by 0.0180167
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.487
ELB improved by 0.017156
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.47
ELB improved by 0.0163228
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.455
ELB improved by 0.0155198
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.44
ELB improved by 0.0147487
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.426
ELB improved by 0.0140101
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.413
ELB improved by 0.0133038
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.4
ELB improved by 0.0126294
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.388
ELB improved by 0.011986
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.377
ELB improved by 0.0113727
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.366
ELB improved by 0.0107885
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.356
ELB improved by 0.0102321
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.346
ELB improved by 0.00970246
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.049 0.181 2.217
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.053 | 0.004 | 0.057 | |
| getPIPs | 0.052 | 0.000 | 0.052 | |
| graper | 0.079 | 0.008 | 0.088 | |
| makeExampleData | 0.006 | 0.007 | 0.014 | |
| makeExampleDataWithUnequalGroups | 0.013 | 0.000 | 0.013 | |
| plotELBO | 0.216 | 0.028 | 0.243 | |
| plotGroupPenalties | 0.860 | 0.044 | 0.905 | |
| plotPosterior | 0.477 | 0.003 | 0.481 | |
| predict.graper | 2.065 | 0.013 | 2.077 | |
| print.graper | 0.054 | 0.000 | 0.053 | |