| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-11-02 11:40:44 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 846/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| geva 1.10.0 (landing page) Itamar José Guimarães Nunes
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the geva package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geva.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: geva |
| Version: 1.10.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data geva |
| StartedAt: 2023-11-02 01:34:32 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 01:36:54 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 142.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data geva
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* checking for file ‘geva/DESCRIPTION’ ... OK
* preparing ‘geva’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘geva.Rmd’ using rmarkdown
Warning in Sys.setlocale("LC_TIME", "English_United States") :
OS reports request to set locale to "English_United States" cannot be honored
! Missing $ inserted.
<inserted text>
$
l.412 ...e is applied using a threshold of (\alpha
\textless{}
Try to find the following text in /home/biocbuild/tmp/RtmpJrRXoo/Rbuild3a22d01d76943c/geva/vignettes/geva.Rmd:
...e is applied using a threshold of (\alpha
You may need to add $ $ around a certain inline R expression `r ` in /home/biocbuild/tmp/RtmpJrRXoo/Rbuild3a22d01d76943c/geva/vignettes/geva.Rmd (see the above hint). See https://github.com/rstudio/rmarkdown/issues/385 for more info.
Error: processing vignette 'geva.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpJrRXoo/Rbuild3a22d01d76943c/geva/vignettes/geva.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See geva.log for more info.
--- failed re-building ‘geva.Rmd’
SUMMARY: processing the following file failed:
‘geva.Rmd’
Error: Vignette re-building failed.
Execution halted