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This page was generated on 2024-04-17 11:37:45 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 786/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gemma.R 2.0.0  (landing page)
Ogan Mancarci
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/gemma.R
git_branch: RELEASE_3_18
git_last_commit: 1f19014
git_last_commit_date: 2023-10-24 11:44:18 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for gemma.R on merida1


To the developers/maintainers of the gemma.R package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gemma.R.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: gemma.R
Version: 2.0.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gemma.R
StartedAt: 2024-04-15 18:51:33 -0400 (Mon, 15 Apr 2024)
EndedAt: 2024-04-15 18:56:39 -0400 (Mon, 15 Apr 2024)
EllapsedTime: 305.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gemma.R
###
##############################################################################
##############################################################################


* checking for file ‘gemma.R/DESCRIPTION’ ... OK
* preparing ‘gemma.R’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gemma.R.Rmd’ using rmarkdown
2024-04-15 18:52:55.149 R[57764:2529959266] XType: com.apple.fonts is not accessible.
2024-04-15 18:52:55.150 R[57764:2529959266] XType: XTFontStaticRegistry is enabled.

Quitting from lines  at lines 248-249 [unnamed-chunk-12] (gemma.R.Rmd)
Error: processing vignette 'gemma.R.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'head': Generic_human is not a valid single platform.
--- failed re-building ‘gemma.R.Rmd’

--- re-building ‘metanalysis.Rmd’ using rmarkdown
--- finished re-building ‘metanalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘gemma.R.Rmd’

Error: Vignette re-building failed.
Execution halted