Pierrick Roger
| Snapshot Date: 2024-03-03 14:05:05 -0500 (Sun, 03 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_18 |
| git_last_commit: 664af9c |
| git_last_commit_date: 2023-10-24 11:36:37 -0500 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-03-04 11:37:09 -0500 (Mon, 04 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 196/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.8.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.8.0.tar.gz |
| StartedAt: 2024-03-03 19:13:48 -0500 (Sun, 03 Mar 2024) |
| EndedAt: 2024-03-03 19:15:20 -0500 (Sun, 03 Mar 2024) |
| EllapsedTime: 92.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/biodbChebi.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 2.948 1.105 5.703
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-03-03 19:14:50.486][biodb::testContext]
biodb.INFO [2024-03-03 19:14:50.491][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:14:50.493][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-03-03 19:14:50.495][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:14:50.496][biodb::testContext]
biodb.INFO [2024-03-03 19:14:50.507][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:14:50.510][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-03 19:14:50.521][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:14:50.523][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-03 19:14:50.525][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-03 19:14:50.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.529][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-03 19:14:50.555][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-03 19:14:50.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.560][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-03 19:14:50.562][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-03 19:14:50.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.566][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-03 19:14:50.568][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-03 19:14:50.570][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-03 19:14:50.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.576][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-03 19:14:50.577][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-03 19:14:50.579][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-03 19:14:50.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.584][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-03 19:14:50.586][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-03 19:14:50.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.592][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-03 19:14:50.593][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-03 19:14:50.595][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-03 19:14:50.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.600][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-03 19:14:50.601][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-03 19:14:50.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.605][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-03 19:14:50.606][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-03 19:14:50.607][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-03 19:14:50.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.611][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:14:50.613][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-03 19:14:50.614][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-03 19:14:50.615][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-03 19:14:50.617][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-03 19:14:50.618][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-03 19:14:50.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.623][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-03 19:14:50.624][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-03 19:14:50.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.629][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-03 19:14:50.631][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-03 19:14:50.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.636][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-03 19:14:50.638][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-03 19:14:50.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.643][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-03 19:14:50.645][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-03 19:14:50.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.650][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-03 19:14:50.652][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-03 19:14:50.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.658][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:14:50.660][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-03 19:14:50.684][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-03 19:14:50.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.691][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-03 19:14:50.693][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-03 19:14:50.695][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-03 19:14:50.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.704][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-03 19:14:50.756][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.788][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-03 19:14:50.790][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.792][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:14:50.793][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.794][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.796][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.797][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.798][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:14:50.800][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:14:50.801][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.802][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-03 19:14:50.803][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:14:50.805][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.806][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.807][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:14:50.807][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:14:50.807][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:14:50.807][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:14:50.807][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:14:50.809][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:14:50.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.812][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:14:50.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.815][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.816][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.818][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.819][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:14:50.820][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:14:50.822][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.823][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.824][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-03 19:14:50.827][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.828][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:14:50.830][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.831][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:14:50.832][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.834][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.835][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.836][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.838][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:14:50.839][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:14:50.840][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.842][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-03 19:14:50.843][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:14:50.844][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.845][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.847][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:14:50.847][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:14:50.847][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:14:50.847][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:14:50.847][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:14:50.848][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:14:50.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.851][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:14:50.852][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.853][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.854][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.856][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.857][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:14:50.858][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:14:50.859][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.860][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.862][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-03 19:14:50.864][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.866][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-03 19:14:50.867][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.868][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:14:50.869][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.870][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.872][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.873][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.875][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:14:50.876][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:14:50.877][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.879][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-03 19:14:50.881][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:14:50.882][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.883][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.884][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.886][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:14:50.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.889][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:14:50.891][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.894][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.895][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.897][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:14:50.898][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:14:50.899][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.901][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.902][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-03 19:14:50.905][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.906][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:14:50.907][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.909][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:14:50.910][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.911][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.912][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.913][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.914][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:14:50.915][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:14:50.916][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.917][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-03 19:14:50.918][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:14:50.919][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.920][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:50.922][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.923][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:14:50.924][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.925][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.926][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:14:50.928][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:50.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:50.930][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:14:50.931][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.932][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:14:50.933][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:14:50.935][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:50.936][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:14:50.942][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:14:50.944][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:50.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:50.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:50.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:50.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:50.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.060][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-03 19:14:51.066][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-03 19:14:51.068][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-03 19:14:51.070][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-03 19:14:51.073][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:14:51.075][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-03 19:14:51.076][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-03 19:14:51.078][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-03 19:14:51.083][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-03 19:14:51.085][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-03 19:14:51.087][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:14:51.089][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-03 19:14:51.091][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-03 19:14:51.093][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-03 19:14:51.095][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-03 19:14:51.097][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-03 19:14:51.099][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-03 19:14:51.101][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-03 19:14:51.103][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:14:51.111][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-03 19:14:51.113][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-03 19:14:51.115][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-03 19:14:51.117][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-03 19:14:51.119][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-03 19:14:51.121][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-03 19:14:51.122][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-03 19:14:51.125][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-03 19:14:51.126][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-03 19:14:51.128][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-03 19:14:51.130][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-03 19:14:51.133][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-03 19:14:51.135][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-03 19:14:51.137][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-03 19:14:51.139][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-03 19:14:51.142][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-03 19:14:51.144][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-03 19:14:51.146][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-03 19:14:51.148][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-03 19:14:51.150][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-03 19:14:51.152][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-03 19:14:51.153][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-03 19:14:51.155][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-03 19:14:51.157][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-03 19:14:51.158][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-03 19:14:51.160][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-03 19:14:51.162][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-03 19:14:51.164][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-03 19:14:51.166][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-03 19:14:51.168][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-03 19:14:51.170][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-03 19:14:51.171][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-03 19:14:51.173][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-03 19:14:51.175][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-03 19:14:51.176][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-03 19:14:51.178][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-03 19:14:51.179][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-03 19:14:51.181][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-03 19:14:51.183][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-03 19:14:51.184][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-03 19:14:51.185][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-03 19:14:51.187][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-03 19:14:51.188][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-03 19:14:51.190][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-03 19:14:51.192][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-03 19:14:51.193][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-03 19:14:51.195][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-03 19:14:51.197][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:14:51.199][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:14:51.200][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-03 19:14:51.202][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-03 19:14:51.204][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-03 19:14:51.206][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-03 19:14:51.208][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-03 19:14:51.210][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-03 19:14:51.212][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-03 19:14:51.213][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-03 19:14:51.215][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-03 19:14:51.217][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-03 19:14:51.219][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-03 19:14:51.220][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-03 19:14:51.221][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-03 19:14:51.223][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-03 19:14:51.224][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-03 19:14:51.230][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-03 19:14:51.232][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:14:51.235][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:14:51.236][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.239][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:14:51.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:51.382][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-03-03 19:14:51.394][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-03-03 19:14:51.397][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:51.399][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-03 19:14:51.400][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:51.402][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:14:51.403][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:51.405][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:14:51.406][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:51.407][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-03-03 19:14:51.409][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-03 19:14:51.410][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:14:51.418][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:51.420][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-03-03 19:14:51.421][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-03-03 19:14:51.422][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-03-03 19:14:51.423][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-03 19:14:51.424][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:14:51.424][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:14:51.424][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:14:51.426][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-03 19:14:51.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:51.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:51.429][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:14:51.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:14:51.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:14:51.432][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:14:51.433][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-03 19:14:51.433][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-03-03 19:14:51.434][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:14:51.435][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:14:51.437][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-03 19:14:51.438][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-03-03 19:14:51.438][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-03-03 19:14:51.446][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:14:51.448][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:14:51.450][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-03-03 19:14:51.451][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:14:51.453][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:14:51.455][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:14:51.488][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-03-03 19:14:51.490][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-03-03 19:14:51.494][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-03-03 19:14:51.500][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-03-03 19:14:51.506][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:14:51.508][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:14:51.510][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-03-03 19:14:51.511][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-03-03 19:14:51.526][biodb::testThat]
biodb.INFO [2024-03-03 19:14:51.527][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-03-03 19:14:51.528][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:51.529][biodb::testThat]
biodb.TRACE[2024-03-03 19:14:51.533][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-03-03 19:14:51.536][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:51.541][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:51.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:51.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:51.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:51.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:51.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:51.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:51.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:51.587][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.590][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.612][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:51.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:51.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.617][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:51.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.658][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:51.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:51.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.662][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:51.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:51.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.684][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.691][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:51.692][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:51.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:51.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.700][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:51.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:51.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:51.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:51.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.721][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:51.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.724][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.729][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:51.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:51.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:51.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:51.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:51.851][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-03-03 19:14:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:51.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:51.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:51.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:51.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-03 19:14:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-03 19:14:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-03 19:14:51.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-03 19:14:51.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-03 19:14:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-03 19:14:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-03 19:14:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-03 19:14:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:51.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:51.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.125][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:52.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.157][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.161][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.198][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.202][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.238][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.284][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.320][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.324][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.394][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.475][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.519][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.584][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.606][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.612][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.620][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.625][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.633][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.651][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.664][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.675][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.687][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.691][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.710][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.714][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.722][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.744][ef$get] fields variable is a list.
biodb.INFO [2024-03-03 19:14:52.756][biodb::testThat]
biodb.INFO [2024-03-03 19:14:52.758][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-03 19:14:52.760][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:52.761][biodb::testThat]
biodb.DEBUG[2024-03-03 19:14:52.780][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-03-03 19:14:52.792][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:52.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-03-03 19:14:52.798][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:52.800][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-03-03 19:14:52.802][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:52.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:52.835][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:52.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:52.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:52.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:52.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:52.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:52.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:52.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:52.855][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.889][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:52.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.901][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.916][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:52.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.938][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.945][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:52.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.949][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:52.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.960][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.967][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.978][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:52.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.990][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:52.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:53.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:53.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:53.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:53.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:53.063][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-03-03 19:14:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-03 19:14:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-03 19:14:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-03 19:14:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-03 19:14:53.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-03 19:14:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-03 19:14:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-03 19:14:53.093][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.095][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-03 19:14:53.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:53.098][biodb::testThat]
biodb.TRACE[2024-03-03 19:14:53.102][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.106][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:53.108][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-03-03 19:14:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:53.184][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-03-03 19:14:53.191][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-03-03 19:14:53.222][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:53.244][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-03-03 19:14:53.246][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:53.248][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-03-03 19:14:53.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:53.286][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:53.288][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:14:53.290][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:53.292][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-03 19:14:53.295][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-03-03 19:14:53.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:53.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:53.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.334][ef$get] fields variable is a list.
biodb.INFO [2024-03-03 19:14:53.342][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.344][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-03-03 19:14:53.345][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:53.346][biodb::testThat]
biodb.TRACE[2024-03-03 19:14:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:53.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:53.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:53.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:53.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:53.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:14:53.488][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:53.490][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-03-03 19:14:53.518][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.520][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-03-03 19:14:53.521][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:53.523][biodb::testThat]
biodb.TRACE[2024-03-03 19:14:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:53.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:53.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-03 19:14:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-03 19:14:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-03 19:14:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-03 19:14:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:53.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:53.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-03 19:14:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-03 19:14:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-03 19:14:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-03 19:14:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-03 19:14:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-03 19:14:53.714][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.716][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-03 19:14:53.717][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:53.719][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.733][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.735][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-03 19:14:53.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:53.738][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.752][biodb::testThat]
biodb.INFO [2024-03-03 19:14:53.754][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-03 19:14:53.755][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:53.756][biodb::testThat]
biodb.DEBUG[2024-03-03 19:14:53.762][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-03-03 19:14:54.552][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-03-03 19:14:55.764][biodb::testThat]
biodb.INFO [2024-03-03 19:14:55.766][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-03 19:14:55.767][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:55.768][biodb::testThat]
biodb.DEBUG[2024-03-03 19:14:56.209][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-03-03 19:14:56.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:56.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:56.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:56.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:56.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:56.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:56.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:56.866][ef$get] fields variable is a list.
biodb.INFO [2024-03-03 19:14:56.868][biodb::testThat]
biodb.INFO [2024-03-03 19:14:56.870][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-03-03 19:14:56.871][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:14:56.872][biodb::testThat]
biodb.TRACE[2024-03-03 19:14:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:56.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:56.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.003][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:57.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:57.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:14:57.010][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.012][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-03 19:14:57.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:57.127][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:57.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:14:57.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.132][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-03-03 19:14:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-03 19:14:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-03 19:14:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.203][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:57.208][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:57.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-03 19:14:57.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.214][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-03 19:14:57.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:57.233][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-03-03 19:14:57.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:57.300][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-03-03 19:14:57.303][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.305][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-03-03 19:14:57.307][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:57.309][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:57.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:57.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:57.328][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.337][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:57.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:57.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.348][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:57.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:57.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.351][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:57.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:57.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:57.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:57.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.385][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.387][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:57.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.391][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.401][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.408][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:57.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:57.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.410][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:57.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:57.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.420][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:57.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:57.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.495][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-03-03 19:14:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:57.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:57.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-03 19:14:57.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.534][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-03 19:14:57.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:57.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:57.632][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-03-03 19:14:57.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:57.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-03-03 19:14:57.637][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.639][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-03-03 19:14:57.641][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:57.643][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:57.645][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:57.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:57.665][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.668][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.675][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:57.676][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:57.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:57.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:57.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:57.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:57.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:57.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:57.721][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:57.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.724][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.725][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:57.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.729][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:57.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.755][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:57.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:57.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.759][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.766][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:57.768][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:57.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.771][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:57.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:57.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.780][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:57.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.839][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-03-03 19:14:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:14:57.891][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:14:57.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:14:57.895][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.897][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-03 19:14:57.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:57.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:57.951][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-03-03 19:14:57.952][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:57.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-03-03 19:14:57.956][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:57.959][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-03-03 19:14:57.960][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:57.962][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:57.963][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:57.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:57.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:57.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:57.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:57.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:57.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:57.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:57.982][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.986][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:57.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.001][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.006][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.016][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.030][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.032][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.037][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.041][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.047][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:58.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:58.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.063][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.110][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-03-03 19:14:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:58.155][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-03-03 19:14:58.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:58.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-03-03 19:14:58.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:58.162][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-03-03 19:14:58.163][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:58.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:58.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:58.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:58.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.191][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.198][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.202][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.203][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.209][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.225][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.230][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.232][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.236][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.243][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.247][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.254][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.257][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:58.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:58.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.267][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.325][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-03-03 19:14:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:58.369][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-03-03 19:14:58.370][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:58.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-03-03 19:14:58.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:58.376][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-03-03 19:14:58.378][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:58.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:58.382][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:58.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:58.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.413][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.419][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.422][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.428][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.439][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.441][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.451][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.457][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.462][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.470][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.473][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:58.481][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:58.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.484][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.539][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-03-03 19:14:58.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:58.585][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-03-03 19:14:58.586][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:58.589][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-03-03 19:14:58.591][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:58.594][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-03-03 19:14:58.595][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:58.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:58.598][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:58.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:58.618][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.622][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.628][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.639][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.642][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.653][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.695][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.704][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.708][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.710][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.727][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.734][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.738][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.745][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.749][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:58.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:58.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.759][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:58.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.819][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-03-03 19:14:58.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:58.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:58.850][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-03-03 19:14:58.852][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:58.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-03-03 19:14:58.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:58.858][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-03-03 19:14:58.859][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:58.861][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:58.862][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:58.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:58.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:58.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:58.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:58.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:58.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:58.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:58.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.885][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.893][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.896][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.902][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:58.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:58.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.953][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:58.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.978][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:58.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:58.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:58.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:58.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:58.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:58.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.059][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-03-03 19:14:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:59.089][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-03-03 19:14:59.090][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:59.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-03-03 19:14:59.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:59.096][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-03-03 19:14:59.097][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:59.099][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:59.100][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:59.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:59.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.122][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.129][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.131][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.133][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.140][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.151][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.182][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.183][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.186][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.196][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.207][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.216][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.218][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.227][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.287][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-03-03 19:14:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:59.315][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-03-03 19:14:59.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:59.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-03-03 19:14:59.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:59.323][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-03-03 19:14:59.325][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:59.326][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:59.328][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:59.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:59.348][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.359][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.361][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.371][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.383][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.393][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.411][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.413][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.415][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.419][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.428][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.435][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.444][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.447][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.536][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-03-03 19:14:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:59.569][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-03-03 19:14:59.571][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:59.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-03-03 19:14:59.575][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:59.577][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-03-03 19:14:59.578][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:59.579][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:59.580][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:59.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:59.597][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.606][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.611][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.615][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.621][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.624][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.635][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.645][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.655][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.657][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.661][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.671][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.678][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.681][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.687][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.691][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.701][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.761][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-03-03 19:14:59.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:14:59.793][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-03-03 19:14:59.794][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:14:59.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-03-03 19:14:59.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:14:59.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-03-03 19:14:59.802][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:14:59.803][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:14:59.805][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:14:59.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:14:59.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:14:59.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:14:59.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:14:59.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:14:59.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:14:59.829][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.834][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.842][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:14:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:14:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.852][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.856][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:14:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:14:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.865][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:14:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:14:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.876][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:14:59.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:14:59.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.886][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.887][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.889][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.890][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:14:59.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.899][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:14:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.910][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:14:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:14:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.920][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:14:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:14:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.930][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:14:59.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:14:59.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:14:59.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:14:59.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:14:59.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.982][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-03-03 19:14:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:14:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:14:59.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:14:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:14:59.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:14:59.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:00.013][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-03-03 19:15:00.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:00.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-03-03 19:15:00.017][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:00.025][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-03-03 19:15:00.026][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:00.027][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:00.029][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:00.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:00.046][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.050][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.057][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.060][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.071][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.090][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.102][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.124][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.135][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.138][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.149][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.204][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-03-03 19:15:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:00.237][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-03-03 19:15:00.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:00.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-03-03 19:15:00.241][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:00.244][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-03-03 19:15:00.245][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:00.247][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:00.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:00.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:00.265][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.269][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.275][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.279][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.285][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.299][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.304][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.311][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.315][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.323][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.328][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.338][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.342][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.352][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.393][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-03-03 19:15:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:00.450][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-03-03 19:15:00.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:00.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-03-03 19:15:00.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:00.459][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-03-03 19:15:00.460][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:00.462][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:00.464][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:00.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:00.479][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.482][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.488][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.499][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.502][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.511][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.516][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.521][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.522][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.526][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.528][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.538][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.545][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.554][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.555][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.567][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.607][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-03-03 19:15:00.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:00.634][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-03-03 19:15:00.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:00.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-03-03 19:15:00.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:00.650][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-03-03 19:15:00.651][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:00.652][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:00.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:00.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:00.673][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.685][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.686][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.688][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.695][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.707][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.717][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.727][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.728][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.734][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.739][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.742][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.748][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.749][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.752][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.758][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.759][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.770][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.823][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-03-03 19:15:00.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:00.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:00.860][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-03-03 19:15:00.861][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:00.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-03-03 19:15:00.865][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:00.866][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-03-03 19:15:00.868][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:00.869][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:00.871][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:00.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:00.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:00.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:00.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:00.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:00.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:00.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:00.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.890][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.896][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.898][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.900][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:00.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.907][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:00.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.918][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:00.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:00.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.938][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:00.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:00.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:00.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.958][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:00.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:00.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.967][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.968][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.971][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:00.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:00.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.978][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.982][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:00.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:00.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:00.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:00.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:00.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.041][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-03-03 19:15:01.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:01.078][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-03-03 19:15:01.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:01.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-03-03 19:15:01.082][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:01.084][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-03-03 19:15:01.086][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:01.088][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:01.089][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:01.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:01.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.116][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.119][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.130][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.139][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.156][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.158][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.162][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.181][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.194][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.202][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.252][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-03-03 19:15:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:01.288][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-03-03 19:15:01.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:01.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-03-03 19:15:01.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:01.296][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-03-03 19:15:01.297][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:01.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:01.299][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:01.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:01.316][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.319][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.326][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.330][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.337][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.339][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.347][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.356][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.363][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.365][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.367][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.377][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.381][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.385][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.392][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.403][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.464][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-03-03 19:15:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:01.503][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-03-03 19:15:01.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:01.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-03-03 19:15:01.508][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:01.511][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-03-03 19:15:01.512][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:01.514][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:01.515][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:01.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:01.535][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.538][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.544][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.575][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.584][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.599][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.604][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.607][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.613][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.618][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.689][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-03-03 19:15:01.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:01.716][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-03-03 19:15:01.717][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:01.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-03-03 19:15:01.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:01.725][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-03-03 19:15:01.726][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:01.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:01.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:01.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:01.745][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.749][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.756][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.757][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.759][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.763][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.777][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.784][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.793][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.794][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.797][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.801][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.807][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.809][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.814][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.818][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:01.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.824][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:01.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.834][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.838][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.903][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-03-03 19:15:01.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:01.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:01.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:01.932][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-03-03 19:15:01.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:01.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-03-03 19:15:01.936][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:01.938][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-03-03 19:15:01.939][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:01.940][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:01.941][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:01.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:01.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:01.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:01.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:01.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:01.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:01.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:01.960][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.964][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.971][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.980][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:01.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:01.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.002][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:02.007][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:02.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.009][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.010][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:02.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.031][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:02.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:02.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.040][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:02.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:02.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:02.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:02.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:02.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.052][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.110][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-03-03 19:15:02.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:02.151][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:02.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:15:02.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:02.157][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-03 19:15:02.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:02.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:02.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:02.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-03-03 19:15:02.859][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:02.863][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-03-03 19:15:02.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:02.871][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:02.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-03-03 19:15:02.875][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:02.877][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-03-03 19:15:02.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:02.894][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-03-03 19:15:02.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:02.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-03-03 19:15:02.899][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:02.901][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-03-03 19:15:02.903][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:02.904][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:02.905][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:02.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:02.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:02.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:02.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:02.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:02.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:02.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:02.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.927][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.933][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:02.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:02.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:02.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:02.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.958][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:02.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:02.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.975][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:02.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:02.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.983][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:02.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.988][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:02.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.991][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:02.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:02.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.005][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:03.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:03.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.008][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:03.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:03.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:03.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:03.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.028][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.081][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-03-03 19:15:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:03.153][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-03-03 19:15:03.154][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:03.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-03-03 19:15:03.158][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:03.161][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-03-03 19:15:03.163][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:03.164][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:03.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:03.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.186][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.190][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.197][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:03.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:03.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.201][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.207][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:03.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.211][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:03.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:03.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:03.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:03.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:03.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:03.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:03.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.239][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.241][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:03.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:03.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.244][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.252][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.259][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:03.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:03.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:03.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:03.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:03.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:03.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:03.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:03.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.284][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.336][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-03-03 19:15:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:03.385][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:03.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:15:03.388][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:03.390][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-03 19:15:03.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:03.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:03.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:03.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:03.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:03.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:03.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:03.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:04.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:04.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-03-03 19:15:04.203][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:04.206][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-03-03 19:15:04.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.858][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:04.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-03 19:15:04.877][biodb::testThat]
biodb.INFO [2024-03-03 19:15:04.879][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-03-03 19:15:04.881][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:04.882][biodb::testThat]
biodb.TRACE[2024-03-03 19:15:04.886][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-03 19:15:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-03 19:15:04.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:04.932][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:04.936][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:04.937][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-03 19:15:04.939][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:04.941][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-03 19:15:04.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:04.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:04.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:04.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:04.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:04.974][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:04.978][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:04.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-03 19:15:04.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:04.983][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-03 19:15:04.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:04.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:04.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:04.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:04.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:04.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:04.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.056][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-03 19:15:05.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.087][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.101][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.108][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-03 19:15:05.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.165][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.173][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.178][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.185][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.186][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-03 19:15:05.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.229][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.238][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-03 19:15:05.275][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-03 19:15:05.276][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-03 19:15:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:05.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:05.401][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:05.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-03 19:15:05.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:05.407][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-03 19:15:05.411][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:05.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:05.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-03 19:15:05.419][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:05.421][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-03 19:15:05.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.544][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-03 19:15:05.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.587][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.594][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.598][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.604][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.605][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-03 19:15:05.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.693][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.699][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.703][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.712][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.716][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:05.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.728][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-03 19:15:05.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.752][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.760][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.764][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.767][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.773][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:05.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-03 19:15:05.790][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-03 19:15:05.791][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-03 19:15:05.803][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:05.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:05.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-03 19:15:05.812][biodb::testThat]
biodb.INFO [2024-03-03 19:15:05.818][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-03-03 19:15:05.819][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:05.820][biodb::testThat]
biodb.TRACE[2024-03-03 19:15:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-03 19:15:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-03 19:15:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:05.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:05.861][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:05.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-03 19:15:05.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:05.865][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-03 19:15:05.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:05.897][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:05.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-03 19:15:05.900][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:05.901][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-03 19:15:05.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:05.956][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-03 19:15:05.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:05.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:05.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:05.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:05.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:05.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:05.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.983][private$selectFields]
biodb.TRACE[2024-03-03 19:15:05.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:05.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:05.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.989][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:05.994][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:05.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.996][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:05.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:05.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.008][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-03 19:15:06.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.049][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.057][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.064][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-03 19:15:06.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.108][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.120][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.126][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.128][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-03 19:15:06.146][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-03 19:15:06.147][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-03 19:15:06.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:06.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:06.203][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:06.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-03 19:15:06.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:06.214][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-03 19:15:06.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:06.222][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:06.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-03 19:15:06.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:06.227][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-03 19:15:06.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.317][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-03 19:15:06.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.343][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.362][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.363][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-03 19:15:06.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.536][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.544][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.568][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-03 19:15:06.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.615][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.628][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.632][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.633][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-03 19:15:06.648][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-03 19:15:06.650][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-03 19:15:06.663][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:06.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-03 19:15:06.674][biodb::testThat]
biodb.INFO [2024-03-03 19:15:06.676][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-03-03 19:15:06.677][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:06.678][biodb::testThat]
biodb.TRACE[2024-03-03 19:15:06.681][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-03 19:15:06.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-03 19:15:06.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:06.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:06.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:06.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-03-03 19:15:06.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:06.729][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-03-03 19:15:06.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:06.777][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:06.778][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-03-03 19:15:06.780][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:06.781][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-03-03 19:15:06.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:06.834][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-03 19:15:06.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.860][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.868][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.874][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.876][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.881][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-03-03 19:15:06.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.926][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:06.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:06.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.935][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.940][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.946][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.948][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:06.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-03 19:15:06.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:06.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:06.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:06.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:06.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:06.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:06.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:06.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:06.998][private$selectFields]
biodb.TRACE[2024-03-03 19:15:06.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:07.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:07.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.010][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.018][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:07.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-03-03 19:15:07.036][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-03 19:15:07.037][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-03 19:15:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:07.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:07.112][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:07.113][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-03-03 19:15:07.115][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:07.116][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-03-03 19:15:07.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:07.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:07.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-03-03 19:15:07.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:07.129][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-03-03 19:15:07.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.218][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-03-03 19:15:07.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.246][private$selectFields]
biodb.TRACE[2024-03-03 19:15:07.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:07.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:07.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.254][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.258][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.261][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.267][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-03-03 19:15:07.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.308][private$selectFields]
biodb.TRACE[2024-03-03 19:15:07.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:07.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:07.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.317][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.325][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.329][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.330][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:07.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-03-03 19:15:07.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.370][private$selectFields]
biodb.TRACE[2024-03-03 19:15:07.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-03-03 19:15:07.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-03-03 19:15:07.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.379][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.392][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-03-03 19:15:07.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.401][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.402][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-03-03 19:15:07.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-03-03 19:15:07.419][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-03-03 19:15:07.420][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-03-03 19:15:07.448][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:07.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-03-03 19:15:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-03 19:15:07.460][biodb::testThat]
biodb.INFO [2024-03-03 19:15:07.461][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-03-03 19:15:07.462][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:07.464][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:07.466][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-03-03 19:15:07.467][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:07.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-03-03 19:15:07.471][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:07.473][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-03-03 19:15:07.474][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:07.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:07.478][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:07.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.497][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.501][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.506][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:07.507][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:07.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.508][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.510][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:07.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:07.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.514][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:07.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:07.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.520][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.525][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.530][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.532][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:07.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:07.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.536][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.541][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.542][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:07.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:07.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:07.548][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:07.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.551][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:07.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:07.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.556][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.619][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-03-03 19:15:07.620][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-03-03 19:15:07.631][biodb::testThat]
biodb.INFO [2024-03-03 19:15:07.632][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-03-03 19:15:07.634][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:07.635][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:07.648][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-03-03 19:15:07.650][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-03-03 19:15:07.652][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-03-03 19:15:07.653][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-03-03 19:15:07.656][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-03-03 19:15:07.659][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-03-03 19:15:07.660][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:07.663][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-03-03 19:15:07.664][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:07.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.684][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.690][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.696][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:07.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:07.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.700][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.702][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:07.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:07.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.706][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:07.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:07.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.718][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.721][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.725][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:07.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:07.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.728][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.734][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:07.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:07.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.736][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:07.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:07.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.740][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:07.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:07.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.744][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.794][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.796][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.802][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:07.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:07.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.806][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.813][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:07.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:07.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:07.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:07.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:07.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.837][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.845][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.852][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.857][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:07.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.861][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.873][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:07.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:07.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.882][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:07.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:07.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.893][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:07.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:07.902][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:07.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:07.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:07.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:07.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:07.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:07.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:07.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:07.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:07.959][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.966][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:07.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:07.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.969][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.976][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:07.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:07.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:07.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:07.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:07.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:07.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:07.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:07.998][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:08.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:08.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:08.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.007][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:08.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.020][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:08.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:08.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.024][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:08.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:08.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.035][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.040][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:08.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:08.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.043][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.048][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:08.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:08.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:08.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:08.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.058][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:08.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:08.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:08.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:08.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:08.144][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-03-03 19:15:08.145][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-03-03 19:15:08.146][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-03-03 19:15:08.165][biodb::testThat]
biodb.INFO [2024-03-03 19:15:08.166][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-03-03 19:15:08.167][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:08.168][biodb::testThat]
biodb.INFO [2024-03-03 19:15:08.200][biodb::testThat]
biodb.INFO [2024-03-03 19:15:08.201][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-03-03 19:15:08.203][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:08.205][biodb::testThat]
biodb.INFO [2024-03-03 19:15:08.224][biodb::testThat]
biodb.INFO [2024-03-03 19:15:08.225][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-03-03 19:15:08.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:08.227][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:08.231][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:08.236][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:08.238][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-03-03 19:15:08.239][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:08.241][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-03-03 19:15:08.256][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:08.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:08.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.260][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:08.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:08.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:08.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:08.264][ef$get] fields variable is a list.
biodb.INFO [2024-03-03 19:15:08.266][biodb::testThat]
biodb.INFO [2024-03-03 19:15:08.267][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-03-03 19:15:08.269][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:08.270][biodb::testThat]
biodb.ERROR[2024-03-03 19:15:08.292][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-03-03 19:15:08.314][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-03-03 19:15:08.334][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-03 19:15:08.336][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-03-03 19:15:08.338][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-03-03 19:15:08.340][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-03 19:15:08.341][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.344][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.346][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-03 19:15:08.361][biodb::testContext]
biodb.INFO [2024-03-03 19:15:08.362][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:15:08.363][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-03-03 19:15:08.364][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:15:08.365][biodb::testContext]
biodb.INFO [2024-03-03 19:15:08.367][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:15:08.368][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-03 19:15:08.373][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:08.374][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-03 19:15:08.375][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-03 19:15:08.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.379][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-03 19:15:08.380][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-03 19:15:08.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.383][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-03 19:15:08.385][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-03 19:15:08.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.390][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-03 19:15:08.391][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-03 19:15:08.392][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-03 19:15:08.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.396][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-03 19:15:08.397][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-03 19:15:08.399][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-03 19:15:08.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.404][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-03 19:15:08.405][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-03 19:15:08.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.409][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-03 19:15:08.410][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-03 19:15:08.411][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-03 19:15:08.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.415][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-03 19:15:08.416][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-03 19:15:08.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.421][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-03 19:15:08.422][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-03 19:15:08.424][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-03 19:15:08.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.428][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:15:08.429][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-03 19:15:08.430][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-03 19:15:08.439][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-03 19:15:08.442][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-03 19:15:08.444][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-03 19:15:08.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.449][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-03 19:15:08.451][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-03 19:15:08.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.455][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-03 19:15:08.456][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-03 19:15:08.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.461][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-03 19:15:08.462][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-03 19:15:08.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.465][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-03 19:15:08.466][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-03 19:15:08.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.469][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-03 19:15:08.470][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-03 19:15:08.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.474][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:15:08.474][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-03 19:15:08.496][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-03 19:15:08.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.501][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-03 19:15:08.502][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-03 19:15:08.504][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-03 19:15:08.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.509][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-03 19:15:08.511][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.513][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-03 19:15:08.514][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.515][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:08.516][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.517][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.518][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.519][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.520][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:15:08.522][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:08.523][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.525][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-03 19:15:08.526][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:08.527][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.529][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.530][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:08.530][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:08.530][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:08.530][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:15:08.530][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:15:08.531][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:08.532][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.534][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:08.536][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.537][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.538][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.540][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.541][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:08.542][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:08.543][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.544][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.546][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-03 19:15:08.549][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.550][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:15:08.551][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.553][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:08.554][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.555][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.557][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.558][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.559][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:15:08.560][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:08.561][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.562][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-03 19:15:08.563][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:08.564][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.565][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.566][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:08.566][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:08.566][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:08.566][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:15:08.566][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:15:08.567][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:08.567][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.568][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.569][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:08.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.571][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.572][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.573][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.574][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:08.575][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:08.576][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.577][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.579][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-03 19:15:08.581][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.583][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-03 19:15:08.584][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.585][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:08.586][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.587][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.588][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.589][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.590][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:15:08.591][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:08.593][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.594][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-03 19:15:08.596][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:08.597][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.598][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.600][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.601][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:08.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.605][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:08.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.609][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.611][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.612][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:08.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:08.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.615][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.617][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-03 19:15:08.619][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.620][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:15:08.621][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.622][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:08.624][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.625][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.626][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.627][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.628][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:15:08.629][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:08.630][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.632][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-03 19:15:08.633][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:08.634][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.635][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:08.636][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.637][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:08.639][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.640][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.641][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:08.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:08.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:08.652][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:08.653][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.654][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:08.656][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:08.657][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:08.658][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:08.660][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:08.661][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.748][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-03 19:15:08.750][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-03 19:15:08.751][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-03 19:15:08.753][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-03 19:15:08.754][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:15:08.756][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-03 19:15:08.757][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-03 19:15:08.758][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-03 19:15:08.760][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-03 19:15:08.761][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-03 19:15:08.762][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:15:08.763][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-03 19:15:08.764][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-03 19:15:08.766][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-03 19:15:08.767][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-03 19:15:08.768][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-03 19:15:08.770][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-03 19:15:08.772][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-03 19:15:08.774][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:15:08.776][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-03 19:15:08.778][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-03 19:15:08.779][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-03 19:15:08.781][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-03 19:15:08.782][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-03 19:15:08.783][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-03 19:15:08.785][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-03 19:15:08.787][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-03 19:15:08.789][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-03 19:15:08.791][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-03 19:15:08.793][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-03 19:15:08.795][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-03 19:15:08.797][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-03 19:15:08.798][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-03 19:15:08.800][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-03 19:15:08.802][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-03 19:15:08.804][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-03 19:15:08.806][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-03 19:15:08.807][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-03 19:15:08.809][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-03 19:15:08.810][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-03 19:15:08.812][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-03 19:15:08.813][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-03 19:15:08.814][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-03 19:15:08.816][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-03 19:15:08.817][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-03 19:15:08.818][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-03 19:15:08.820][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-03 19:15:08.830][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-03 19:15:08.832][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-03 19:15:08.834][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-03 19:15:08.835][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-03 19:15:08.837][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-03 19:15:08.839][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-03 19:15:08.840][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-03 19:15:08.842][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-03 19:15:08.844][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-03 19:15:08.846][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-03 19:15:08.847][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-03 19:15:08.849][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-03 19:15:08.851][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-03 19:15:08.853][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-03 19:15:08.854][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-03 19:15:08.856][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-03 19:15:08.858][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-03 19:15:08.860][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-03 19:15:08.861][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-03 19:15:08.863][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:15:08.864][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:15:08.865][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-03 19:15:08.866][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-03 19:15:08.867][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-03 19:15:08.869][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-03 19:15:08.871][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-03 19:15:08.873][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-03 19:15:08.874][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-03 19:15:08.877][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-03 19:15:08.879][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-03 19:15:08.881][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-03 19:15:08.883][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-03 19:15:08.886][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-03 19:15:08.887][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-03 19:15:08.888][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-03 19:15:08.890][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-03 19:15:08.891][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-03 19:15:08.894][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:15:08.895][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:08.896][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.898][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:08.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:08.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:08.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:08.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:08.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:08.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:08.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.020][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-03-03 19:15:09.027][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-03-03 19:15:09.029][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.030][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.031][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.032][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:09.033][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.034][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.035][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.036][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-03-03 19:15:09.037][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-03 19:15:09.039][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:09.040][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.041][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-03-03 19:15:09.043][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-03-03 19:15:09.044][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-03-03 19:15:09.046][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.047][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:09.047][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:09.047][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:09.049][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-03 19:15:09.050][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.051][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:09.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.055][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.056][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-03 19:15:09.056][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-03-03 19:15:09.057][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:09.058][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:09.059][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.060][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-03-03 19:15:09.060][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-03-03 19:15:09.061][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:15:09.063][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:15:09.065][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-03-03 19:15:09.066][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:15:09.067][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:15:09.069][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:15:09.072][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-03-03 19:15:09.073][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-03-03 19:15:09.075][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-03-03 19:15:09.076][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-03-03 19:15:09.077][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:15:09.078][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:15:09.080][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-03-03 19:15:09.081][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-03-03 19:15:09.082][biodb::testThat]
biodb.INFO [2024-03-03 19:15:09.083][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-03-03 19:15:09.084][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:09.085][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:09.091][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-03-03 19:15:09.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-03-03 19:15:09.099][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.101][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-03-03 19:15:09.106][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.109][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-03-03 19:15:09.111][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.113][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-03-03 19:15:09.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-03-03 19:15:09.141][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.143][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-03-03 19:15:09.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.210][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-03-03 19:15:09.213][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.215][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-03-03 19:15:09.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.236][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.238][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-03-03 19:15:09.239][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.241][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-03-03 19:15:09.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.276][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.280][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.281][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-03-03 19:15:09.282][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.284][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-03-03 19:15:09.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-03-03 19:15:09.311][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.313][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-03-03 19:15:09.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.336][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-03-03 19:15:09.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.341][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-03-03 19:15:09.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-03 19:15:09.365][biodb::testThat]
biodb.INFO [2024-03-03 19:15:09.367][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-03-03 19:15:09.368][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:09.370][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:09.374][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.377][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-03-03 19:15:09.380][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.383][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-03-03 19:15:09.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:09.409][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:09.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-03-03 19:15:09.412][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:09.414][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-03-03 19:15:09.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:09.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-03 19:15:09.616][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-03 19:15:09.618][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-03-03 19:15:09.619][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-03-03 19:15:09.621][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-03 19:15:09.622][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:09.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:09.624][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.626][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-03 19:15:09.633][biodb::testContext]
biodb.INFO [2024-03-03 19:15:09.634][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:15:09.636][biodb::testContext] Test context - Test web services
biodb.INFO [2024-03-03 19:15:09.637][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:15:09.639][biodb::testContext]
biodb.INFO [2024-03-03 19:15:09.642][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:15:09.644][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-03 19:15:09.649][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:09.651][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-03 19:15:09.653][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-03 19:15:09.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.658][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-03 19:15:09.660][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-03 19:15:09.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.665][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-03 19:15:09.666][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-03 19:15:09.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.671][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-03 19:15:09.672][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-03 19:15:09.673][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-03 19:15:09.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.678][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-03 19:15:09.680][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-03 19:15:09.681][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-03 19:15:09.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.684][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-03 19:15:09.686][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-03 19:15:09.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.690][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-03 19:15:09.691][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-03 19:15:09.693][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-03 19:15:09.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.696][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-03 19:15:09.697][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-03 19:15:09.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.702][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-03 19:15:09.703][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-03 19:15:09.704][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-03 19:15:09.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.709][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:15:09.710][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-03 19:15:09.712][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-03 19:15:09.713][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-03 19:15:09.714][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-03 19:15:09.715][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-03 19:15:09.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.720][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-03 19:15:09.721][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-03 19:15:09.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.725][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-03 19:15:09.727][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-03 19:15:09.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.732][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-03 19:15:09.733][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-03 19:15:09.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.738][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-03 19:15:09.739][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-03 19:15:09.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.743][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-03 19:15:09.745][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-03 19:15:09.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.749][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:15:09.750][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-03 19:15:09.773][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-03 19:15:09.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.778][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-03 19:15:09.779][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-03 19:15:09.780][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-03 19:15:09.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.784][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-03 19:15:09.786][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.788][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-03 19:15:09.789][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.790][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:09.791][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.792][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.792][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.793][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.794][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:15:09.795][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:09.796][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.798][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-03 19:15:09.798][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:09.799][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.800][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.801][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:09.801][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:09.801][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:09.801][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:15:09.801][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:15:09.802][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:09.804][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.805][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.806][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:09.807][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.809][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.810][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.812][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:09.813][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:09.814][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.815][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.817][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-03 19:15:09.820][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.822][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:15:09.823][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.825][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:09.826][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.828][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.829][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.830][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.831][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:15:09.833][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:09.834][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.836][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-03 19:15:09.837][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:09.838][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.840][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.842][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:09.842][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:09.842][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:09.842][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:15:09.842][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:15:09.843][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:09.844][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.845][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.846][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:09.848][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.849][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.850][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.851][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.852][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:09.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:09.855][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.856][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.858][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-03 19:15:09.860][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.861][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-03 19:15:09.863][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.865][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:09.866][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.868][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.869][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.871][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.872][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:15:09.873][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:09.874][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.875][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-03 19:15:09.876][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:09.878][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.879][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.880][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.882][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:09.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.886][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:09.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.890][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.891][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.892][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:09.893][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:09.894][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.896][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.897][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-03 19:15:09.900][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.902][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:15:09.903][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.905][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:09.906][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.907][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.908][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.909][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.910][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:15:09.912][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:09.913][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.915][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-03 19:15:09.916][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:09.917][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.919][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:09.920][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.921][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:09.923][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.924][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.925][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:09.926][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:09.927][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:09.928][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:09.929][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.930][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:09.932][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:09.933][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:09.934][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:09.936][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:09.938][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:09.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:09.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:09.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:09.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:09.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.039][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-03 19:15:10.041][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-03 19:15:10.043][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-03 19:15:10.045][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-03 19:15:10.047][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:15:10.049][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-03 19:15:10.051][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-03 19:15:10.053][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-03 19:15:10.054][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-03 19:15:10.056][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-03 19:15:10.058][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:15:10.060][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-03 19:15:10.061][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-03 19:15:10.063][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-03 19:15:10.065][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-03 19:15:10.067][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-03 19:15:10.068][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-03 19:15:10.070][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-03 19:15:10.072][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:15:10.074][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-03 19:15:10.075][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-03 19:15:10.077][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-03 19:15:10.079][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-03 19:15:10.081][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-03 19:15:10.082][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-03 19:15:10.084][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-03 19:15:10.086][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-03 19:15:10.087][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-03 19:15:10.089][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-03 19:15:10.091][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-03 19:15:10.092][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-03 19:15:10.093][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-03 19:15:10.095][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-03 19:15:10.097][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-03 19:15:10.098][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-03 19:15:10.100][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-03 19:15:10.102][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-03 19:15:10.103][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-03 19:15:10.105][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-03 19:15:10.107][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-03 19:15:10.109][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-03 19:15:10.110][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-03 19:15:10.113][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-03 19:15:10.115][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-03 19:15:10.116][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-03 19:15:10.118][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-03 19:15:10.120][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-03 19:15:10.122][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-03 19:15:10.124][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-03 19:15:10.125][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-03 19:15:10.127][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-03 19:15:10.130][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-03 19:15:10.131][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-03 19:15:10.133][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-03 19:15:10.134][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-03 19:15:10.136][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-03 19:15:10.138][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-03 19:15:10.139][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-03 19:15:10.141][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-03 19:15:10.142][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-03 19:15:10.144][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-03 19:15:10.145][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-03 19:15:10.147][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-03 19:15:10.148][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-03 19:15:10.150][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-03 19:15:10.151][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-03 19:15:10.153][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:15:10.155][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:15:10.157][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-03 19:15:10.158][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-03 19:15:10.161][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-03 19:15:10.163][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-03 19:15:10.164][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-03 19:15:10.166][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-03 19:15:10.167][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-03 19:15:10.169][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-03 19:15:10.171][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-03 19:15:10.172][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-03 19:15:10.174][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-03 19:15:10.175][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-03 19:15:10.177][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-03 19:15:10.179][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-03 19:15:10.181][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-03 19:15:10.182][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-03 19:15:10.185][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:15:10.186][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:10.188][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.190][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.319][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-03-03 19:15:10.321][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-03-03 19:15:10.323][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.324][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.326][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.327][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:10.328][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.329][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.330][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.331][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-03-03 19:15:10.333][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-03 19:15:10.334][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:10.335][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.336][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-03-03 19:15:10.337][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-03-03 19:15:10.339][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-03-03 19:15:10.341][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.342][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:10.342][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:10.342][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:10.343][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-03 19:15:10.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.347][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:10.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.352][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-03 19:15:10.352][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-03-03 19:15:10.354][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:10.355][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:10.356][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.358][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-03-03 19:15:10.358][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-03-03 19:15:10.359][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:15:10.361][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:15:10.363][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-03-03 19:15:10.365][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:15:10.367][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:15:10.369][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:15:10.373][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-03-03 19:15:10.374][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-03-03 19:15:10.375][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-03-03 19:15:10.383][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-03-03 19:15:10.385][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:15:10.386][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:15:10.388][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-03-03 19:15:10.389][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-03-03 19:15:10.391][biodb::testThat]
biodb.INFO [2024-03-03 19:15:10.391][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-03-03 19:15:10.392][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:10.393][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:10.397][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-03-03 19:15:10.401][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:10.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-03-03 19:15:10.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:10.407][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-03-03 19:15:10.410][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:10.414][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:10.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-03-03 19:15:10.416][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:10.418][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-03-03 19:15:10.430][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-03 19:15:10.432][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-03-03 19:15:10.433][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-03-03 19:15:10.434][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-03 19:15:10.436][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.437][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.439][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-03 19:15:10.444][biodb::testContext]
biodb.INFO [2024-03-03 19:15:10.445][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:15:10.446][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-03-03 19:15:10.447][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-03 19:15:10.447][biodb::testContext]
biodb.INFO [2024-03-03 19:15:10.449][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:15:10.451][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-03 19:15:10.455][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:10.456][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-03 19:15:10.457][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-03 19:15:10.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.461][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-03 19:15:10.462][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-03 19:15:10.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.466][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-03 19:15:10.468][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-03 19:15:10.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.472][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-03 19:15:10.473][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-03 19:15:10.474][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-03 19:15:10.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.479][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-03 19:15:10.480][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-03 19:15:10.482][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-03 19:15:10.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.486][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-03 19:15:10.488][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-03 19:15:10.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.493][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-03 19:15:10.495][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-03 19:15:10.496][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-03 19:15:10.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.500][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-03 19:15:10.501][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-03 19:15:10.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.505][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-03 19:15:10.506][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-03 19:15:10.508][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-03 19:15:10.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.512][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:15:10.513][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-03 19:15:10.515][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-03 19:15:10.516][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-03 19:15:10.517][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-03 19:15:10.518][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-03 19:15:10.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.523][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-03 19:15:10.524][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-03 19:15:10.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.529][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-03 19:15:10.530][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-03 19:15:10.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.534][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-03 19:15:10.536][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-03 19:15:10.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.539][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-03 19:15:10.541][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-03 19:15:10.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.545][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-03 19:15:10.546][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-03 19:15:10.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.549][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-03 19:15:10.550][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-03 19:15:10.578][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-03 19:15:10.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.584][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-03 19:15:10.585][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-03 19:15:10.587][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-03 19:15:10.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.591][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-03 19:15:10.593][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.594][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-03 19:15:10.595][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.596][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:10.597][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.598][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.599][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.600][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.601][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:15:10.602][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:10.603][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.604][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-03 19:15:10.606][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:10.607][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.608][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.610][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:10.610][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:10.610][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:10.610][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:15:10.610][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:15:10.611][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:10.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.613][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.615][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:10.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.617][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.618][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.619][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.620][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:10.621][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:10.622][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.624][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.625][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-03 19:15:10.627][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.628][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:15:10.629][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.630][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:10.631][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.632][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.633][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.634][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.635][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:15:10.636][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:10.638][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.639][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-03 19:15:10.640][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:10.642][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.643][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.644][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:10.644][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:10.644][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:10.644][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-03 19:15:10.644][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-03 19:15:10.645][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:10.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.649][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:10.651][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.654][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.655][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:10.656][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:10.657][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.659][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.660][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-03 19:15:10.663][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.664][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-03 19:15:10.665][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.667][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:10.668][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.668][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.670][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.671][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.672][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-03 19:15:10.673][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:10.674][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.675][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-03 19:15:10.676][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:10.677][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.678][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.678][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.679][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:10.680][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.681][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:10.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.683][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.684][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.685][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.686][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:10.687][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:10.689][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.690][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.691][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-03 19:15:10.693][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.695][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-03 19:15:10.696][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.697][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:10.698][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.699][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.700][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.703][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-03 19:15:10.704][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:10.705][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.706][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-03 19:15:10.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:10.708][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.709][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:10.711][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.712][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-03 19:15:10.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.715][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:10.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:10.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:10.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:10.720][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.721][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:10.722][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:10.724][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:10.726][self$setPropertyValue]
biodb.DEBUG[2024-03-03 19:15:10.728][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:10.729][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.835][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-03 19:15:10.836][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-03 19:15:10.837][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-03 19:15:10.838][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-03 19:15:10.839][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:15:10.841][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-03 19:15:10.842][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-03 19:15:10.843][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-03 19:15:10.844][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-03 19:15:10.845][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-03 19:15:10.846][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:15:10.848][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-03 19:15:10.850][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-03 19:15:10.851][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-03 19:15:10.852][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-03 19:15:10.853][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-03 19:15:10.854][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-03 19:15:10.856][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-03 19:15:10.857][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:15:10.858][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-03 19:15:10.859][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-03 19:15:10.860][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-03 19:15:10.861][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-03 19:15:10.862][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-03 19:15:10.863][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-03 19:15:10.864][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-03 19:15:10.865][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-03 19:15:10.867][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-03 19:15:10.868][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-03 19:15:10.869][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-03 19:15:10.870][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-03 19:15:10.871][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-03 19:15:10.872][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-03 19:15:10.873][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-03 19:15:10.874][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-03 19:15:10.875][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-03 19:15:10.877][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-03 19:15:10.878][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-03 19:15:10.879][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-03 19:15:10.880][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-03 19:15:10.881][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-03 19:15:10.882][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-03 19:15:10.884][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-03 19:15:10.885][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-03 19:15:10.887][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-03 19:15:10.888][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-03 19:15:10.889][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-03 19:15:10.891][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-03 19:15:10.893][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-03 19:15:10.894][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-03 19:15:10.896][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-03 19:15:10.897][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-03 19:15:10.899][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-03 19:15:10.900][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-03 19:15:10.902][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-03 19:15:10.904][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-03 19:15:10.905][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-03 19:15:10.907][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-03 19:15:10.909][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-03 19:15:10.911][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-03 19:15:10.913][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-03 19:15:10.915][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-03 19:15:10.916][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-03 19:15:10.918][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-03 19:15:10.919][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-03 19:15:10.920][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-03 19:15:10.922][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:15:10.924][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:15:10.925][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-03 19:15:10.927][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-03 19:15:10.929][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-03 19:15:10.930][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-03 19:15:10.932][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-03 19:15:10.934][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-03 19:15:10.935][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-03 19:15:10.937][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-03 19:15:10.939][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-03 19:15:10.941][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-03 19:15:10.943][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-03 19:15:10.945][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-03 19:15:10.946][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-03 19:15:10.948][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-03 19:15:10.949][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-03 19:15:10.951][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-03 19:15:10.953][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-03-03 19:15:10.954][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-03 19:15:10.955][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.958][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:10.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:10.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:10.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:10.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:10.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:10.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:10.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-03 19:15:11.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-03 19:15:11.084][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-03-03 19:15:11.086][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-03-03 19:15:11.088][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:11.089][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-03 19:15:11.090][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:11.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-03 19:15:11.093][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:11.094][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-03 19:15:11.095][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:11.096][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-03-03 19:15:11.096][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-03 19:15:11.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-03 19:15:11.098][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:11.099][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-03-03 19:15:11.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-03-03 19:15:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-03-03 19:15:11.112][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-03 19:15:11.113][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-03 19:15:11.113][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-03 19:15:11.113][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-03 19:15:11.114][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-03 19:15:11.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:11.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:11.117][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-03 19:15:11.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-03 19:15:11.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-03 19:15:11.121][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-03 19:15:11.122][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-03-03 19:15:11.122][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-03-03 19:15:11.123][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-03 19:15:11.124][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-03 19:15:11.125][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-03 19:15:11.126][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-03-03 19:15:11.126][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-03-03 19:15:11.128][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-03 19:15:11.131][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-03 19:15:11.133][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-03-03 19:15:11.134][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-03 19:15:11.136][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-03 19:15:11.138][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-03 19:15:11.142][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-03-03 19:15:11.143][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-03-03 19:15:11.145][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-03-03 19:15:11.146][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-03-03 19:15:11.147][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:15:11.148][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-03 19:15:11.150][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-03-03 19:15:11.151][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-03-03 19:15:11.153][biodb::testThat]
biodb.INFO [2024-03-03 19:15:11.153][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-03-03 19:15:11.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-03 19:15:11.155][biodb::testThat]
biodb.DEBUG[2024-03-03 19:15:11.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-03-03 19:15:11.162][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:11.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-03-03 19:15:11.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:11.167][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-03-03 19:15:11.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-03-03 19:15:11.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-03-03 19:15:11.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-03-03 19:15:11.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:11.179][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-03-03 19:15:11.185][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-03-03 19:15:11.186][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-03-03 19:15:11.188][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-03-03 19:15:11.190][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-03 19:15:11.192][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-03-03 19:15:11.193][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-03-03 19:15:11.195][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-03-03 19:15:11.196][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-03-03 19:15:11.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-03 19:15:11.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-03 19:15:11.216][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.228][ef$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:11.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:11.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.231][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-03-03 19:15:11.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-03-03 19:15:11.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.237][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:11.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:11.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.240][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-03 19:15:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-03 19:15:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-03 19:15:11.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-03 19:15:11.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-03 19:15:11.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-03 19:15:11.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.255][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.257][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:11.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:11.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:11.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-03 19:15:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.268][ef$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:11.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-03-03 19:15:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-03-03 19:15:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:11.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:11.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-03 19:15:11.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.289][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:11.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:11.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.292][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-03 19:15:11.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-03 19:15:11.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:11.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:11.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-03-03 19:15:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-03-03 19:15:11.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:11.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:11.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-03 19:15:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-03 19:15:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:11.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-03 19:15:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-03 19:15:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-03 19:15:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-03 19:15:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-03 19:15:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-03 19:15:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-03 19:15:11.363][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-03-03 19:15:11.369][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-03 19:15:11.371][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-03-03 19:15:11.372][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-03-03 19:15:11.373][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-03 19:15:11.374][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-03 19:15:11.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-03 19:15:11.377][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-03 19:15:11.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-03 19:15:11.380][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-03 19:15:11.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
18.756 1.199 23.570
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 2.948 | 1.105 | 5.703 | |
| ChebiEntry | 0.473 | 0.026 | 0.518 | |