Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-04 11:37:51 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1913/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SELEX 1.34.0 (landing page) Harmen J. Bussemaker
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the SELEX package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SELEX |
Version: 1.34.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SELEX_1.34.0.tar.gz |
StartedAt: 2024-03-03 23:24:49 -0500 (Sun, 03 Mar 2024) |
EndedAt: 2024-03-03 23:26:53 -0500 (Sun, 03 Mar 2024) |
EllapsedTime: 124.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SELEX.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SELEX_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/SELEX.Rcheck’ * using R version 4.3.2 Patched (2023-11-01 r85457) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SELEX/DESCRIPTION’ ... OK * this is package ‘SELEX’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SELEX’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SELEX 19.413 3.025 7.839 selex.seqfilter 9.416 1.487 2.796 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
name | user | system | elapsed | |
SELEX | 19.413 | 3.025 | 7.839 | |
selex.affinities | 1.168 | 0.068 | 0.388 | |
selex.config | 0.130 | 0.010 | 0.034 | |
selex.countSummary | 0.915 | 0.063 | 0.335 | |
selex.counts | 1.620 | 0.094 | 0.617 | |
selex.defineSample | 0.187 | 0.020 | 0.061 | |
selex.exampledata | 0.158 | 0.016 | 0.044 | |
selex.fastqPSFM | 0.858 | 0.051 | 0.310 | |
selex.getAttributes | 0.094 | 0.018 | 0.067 | |
selex.getRound0 | 0.327 | 0.027 | 0.136 | |
selex.getSeqfilter | 0.099 | 0.006 | 0.034 | |
selex.infogain | 2.085 | 0.138 | 0.534 | |
selex.infogainSummary | 0.736 | 0.058 | 0.266 | |
selex.jvmStatus | 0.107 | 0.008 | 0.036 | |
selex.kmax | 0.778 | 0.332 | 0.829 | |
selex.kmerPSFM | 0.292 | 0.072 | 0.233 | |
selex.loadAnnotation | 0.161 | 0.018 | 0.101 | |
selex.mm | 0.275 | 0.032 | 0.250 | |
selex.mmProb | 0.259 | 0.032 | 0.218 | |
selex.mmSummary | 0.513 | 0.043 | 0.227 | |
selex.revcomp | 0.925 | 0.094 | 0.429 | |
selex.run | 1.450 | 0.090 | 0.514 | |
selex.sample | 0.337 | 0.020 | 0.090 | |
selex.samplePSFM | 1.638 | 0.060 | 0.422 | |
selex.sampleSummary | 0.370 | 0.026 | 0.082 | |
selex.saveAnnotation | 0.265 | 0.027 | 0.063 | |
selex.seqfilter | 9.416 | 1.487 | 2.796 | |
selex.setwd | 0.049 | 0.002 | 0.019 | |
selex.split | 0.400 | 0.032 | 0.177 | |
selex.summary | 1.077 | 0.096 | 0.575 | |