| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-04-17 11:36:17 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1686/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCy3 2.22.1 (landing page) Alex Pico
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the RCy3 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCy3.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RCy3 |
| Version: 2.22.1 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RCy3 |
| StartedAt: 2024-04-15 18:45:42 -0400 (Mon, 15 Apr 2024) |
| EndedAt: 2024-04-15 18:46:12 -0400 (Mon, 15 Apr 2024) |
| EllapsedTime: 29.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RCy3
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* checking for file ‘RCy3/DESCRIPTION’ ... OK
* preparing ‘RCy3’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Cancer-networks-and-data.Rmd’ using rmarkdown
--- finished re-building ‘Cancer-networks-and-data.Rmd’
--- re-building ‘Custom-Graphics.Rmd’ using rmarkdown
--- finished re-building ‘Custom-Graphics.Rmd’
--- re-building ‘Cytoscape-and-NDEx.Rmd’ using rmarkdown
--- finished re-building ‘Cytoscape-and-NDEx.Rmd’
--- re-building ‘Cytoscape-and-graphNEL.Rmd’ using rmarkdown
--- finished re-building ‘Cytoscape-and-graphNEL.Rmd’
--- re-building ‘Cytoscape-and-iGraph.Rmd’ using rmarkdown
--- finished re-building ‘Cytoscape-and-iGraph.Rmd’
--- re-building ‘Filtering-Networks.Rmd’ using rmarkdown
--- finished re-building ‘Filtering-Networks.Rmd’
--- re-building ‘Group-nodes.Rmd’ using rmarkdown
--- finished re-building ‘Group-nodes.Rmd’
--- re-building ‘Identifier-mapping.Rmd’ using rmarkdown
Error: processing vignette 'Identifier-mapping.Rmd' failed with diagnostics:
The closing fence on line 216 ("```") in Identifier-mapping.Rmd does not match the opening fence " ```" on line 214. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
Error: tangling vignette 'Identifier-mapping.Rmd' failed with diagnostics:
The closing fence on line 216 ("```") in Identifier-mapping.Rmd does not match the opening fence " ```" on line 214. You are recommended to fix either the opening or closing fence of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote). See https://yihui.org/en/2021/10/unbalanced-delimiters/ for more info.
--- failed re-building ‘Identifier-mapping.Rmd’
--- re-building ‘Importing-data.Rmd’ using rmarkdown
--- finished re-building ‘Importing-data.Rmd’
--- re-building ‘Jupyter-bridge-rcy3.Rmd’ using rmarkdown
--- finished re-building ‘Jupyter-bridge-rcy3.Rmd’
--- re-building ‘Network-functions-and-visualization.Rmd’ using rmarkdown
--- finished re-building ‘Network-functions-and-visualization.Rmd’
--- re-building ‘Overview-of-RCy3.Rmd’ using rmarkdown
--- finished re-building ‘Overview-of-RCy3.Rmd’
--- re-building ‘Phylogenetic-trees.Rmd’ using rmarkdown
--- finished re-building ‘Phylogenetic-trees.Rmd’
--- re-building ‘Upgrading-existing-scripts.Rmd’ using rmarkdown
--- finished re-building ‘Upgrading-existing-scripts.Rmd’
SUMMARY: processing the following files failed:
‘Identifier-mapping.Rmd’ ‘Identifier-mapping.Rmd’
Error: Vignette re-building failed.
Execution halted