Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-04 11:37:38 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1439/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OLIN 1.80.0 (landing page) Matthias Futschik
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the OLIN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OLIN |
Version: 1.80.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OLIN.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OLIN_1.80.0.tar.gz |
StartedAt: 2024-03-03 22:15:34 -0500 (Sun, 03 Mar 2024) |
EndedAt: 2024-03-03 22:16:43 -0500 (Sun, 03 Mar 2024) |
EllapsedTime: 68.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OLIN.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OLIN.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OLIN_1.80.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/OLIN.Rcheck’ * using R version 4.3.2 Patched (2023-11-01 r85457) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OLIN/DESCRIPTION’ ... OK * this is package ‘OLIN’ version ‘1.80.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OLIN’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘marray’ ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘convert’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. Package in Depends field not imported from: ‘locfit’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ino: no visible global function definition for ‘locfit’ ino: no visible global function definition for ‘predict’ lin: no visible global function definition for ‘locfit’ lin: no visible global function definition for ‘predict’ oin: no visible global function definition for ‘gcvplot’ oin: no visible global function definition for ‘locfit’ oin: no visible global function definition for ‘predict’ olin: no visible global function definition for ‘gcv’ olin: no visible global function definition for ‘locfit’ olin: no visible global function definition for ‘predict’ Undefined global functions or variables: gcv gcvplot locfit predict Consider adding importFrom("stats", "predict") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed olin 18.139 0.414 18.734 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.18-bioc/meat/OLIN.Rcheck/00check.log’ for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘OLIN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
name | user | system | elapsed | |
anovaint | 0.246 | 0.022 | 0.273 | |
anovapin | 0.080 | 0.009 | 0.090 | |
anovaplate | 0.084 | 0.011 | 0.096 | |
anovaspatial | 0.164 | 0.023 | 0.191 | |
backgroundCorrect2 | 0.552 | 0.064 | 0.629 | |
bas | 0.243 | 0.010 | 0.256 | |
colorbar.mxy | 0.049 | 0.006 | 0.057 | |
fdr.int | 0 | 0 | 0 | |
fdr.int2 | 0.000 | 0.000 | 0.001 | |
fdr.spatial | 0.000 | 0.000 | 0.001 | |
fdr.spatial2 | 0 | 0 | 0 | |
fgbg.visu | 0.091 | 0.014 | 0.107 | |
ino | 0.294 | 0.029 | 0.328 | |
lin | 0.654 | 0.062 | 0.731 | |
m2v | 0.059 | 0.008 | 0.067 | |
ma.matrix | 0.222 | 0.009 | 0.233 | |
ma.vector | 0.337 | 0.028 | 0.371 | |
mxy.abs.plot | 0.286 | 0.016 | 0.306 | |
mxy.plot | 0.063 | 0.008 | 0.072 | |
mxy2.plot | 0.056 | 0.007 | 0.064 | |
oin | 0.970 | 0.053 | 1.037 | |
olin | 18.139 | 0.414 | 18.734 | |
p.int | 0.000 | 0.001 | 0.000 | |
p.int2 | 0.000 | 0.000 | 0.001 | |
p.spatial | 0 | 0 | 0 | |
p.spatial2 | 0.000 | 0.001 | 0.000 | |
sig.mask | 0.000 | 0.000 | 0.001 | |
sigint.plot | 0 | 0 | 0 | |
sigint.plot2 | 0 | 0 | 0 | |
sigxy.plot | 0.000 | 0.001 | 0.001 | |
sigxy.plot2 | 0.000 | 0.001 | 0.000 | |
v2m | 0.056 | 0.006 | 0.064 | |