Elena Grassi
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/MatrixRider |
| git_branch: RELEASE_3_18 |
| git_last_commit: c7873f6 |
| git_last_commit_date: 2023-10-24 10:42:04 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:40:53 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1161/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MatrixRider 1.34.0 (landing page) Elena Grassi
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the MatrixRider package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixRider.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MatrixRider |
| Version: 1.34.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL MatrixRider |
| StartedAt: 2023-11-01 20:32:11 -0000 (Wed, 01 Nov 2023) |
| EndedAt: 2023-11-01 20:33:07 -0000 (Wed, 01 Nov 2023) |
| EllapsedTime: 55.8 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL MatrixRider ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’ * installing *source* package ‘MatrixRider’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c Biostring_stubs.c -o Biostring_stubs.o gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c CuTest.c -o CuTest.o gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_init_MatrixRider.c -o R_init_MatrixRider.o gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RunCuTest.c -o RunCuTest.o gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c XVector_stubs.c -o XVector_stubs.o gcc -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.1/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c matrix_rider.c -o matrix_rider.o gcc -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o MatrixRider.so Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -L/home/biocbuild/R/R-4.3.1/lib -lR installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-MatrixRider/00new/MatrixRider/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixRider)