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This page was generated on 2024-04-17 11:36:00 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 888/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOsummaries 2.38.0  (landing page)
Raivo Kolde
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/GOsummaries
git_branch: RELEASE_3_18
git_last_commit: 305917d
git_last_commit_date: 2023-10-24 10:38:24 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for GOsummaries on nebbiolo2


To the developers/maintainers of the GOsummaries package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOsummaries.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GOsummaries
Version: 2.38.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOsummaries
StartedAt: 2024-04-15 17:22:23 -0400 (Mon, 15 Apr 2024)
EndedAt: 2024-04-15 17:22:42 -0400 (Mon, 15 Apr 2024)
EllapsedTime: 18.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOsummaries
###
##############################################################################
##############################################################################


* checking for file ‘GOsummaries/DESCRIPTION’ ... OK
* preparing ‘GOsummaries’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GOsummaries-basics.Rnw’ using Sweave
Warning: Package 'GOsummaries' is deprecated and will be removed from
  Bioconductor version 3.19
This is vegan 2.6-4
Warning: Please consider using the new package "gprofiler2". At the moment you are using a deprecated package relying on outdated data.
  More information at https://biit.cs.ut.ee/gprofiler/page/r-new. Feel free to contact us at biit.support@ut.ee for further help.

Error: processing vignette 'GOsummaries-basics.Rnw' failed with diagnostics:
 chunk 3 (label = example1) 
Error : Internal Server Error


--- failed re-building ‘GOsummaries-basics.Rnw’

SUMMARY: processing the following file failed:
  ‘GOsummaries-basics.Rnw’

Error: Vignette re-building failed.
Execution halted