| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:36:50 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 882/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GOSemSim 2.28.1 (landing page) Guangchuang Yu
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the GOSemSim package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOSemSim.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GOSemSim |
| Version: 2.28.1 |
| Command: rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSemSim.buildbin-libdir GOSemSim_2.28.1.tar.gz |
| StartedAt: 2024-04-16 07:06:07 -0400 (Tue, 16 Apr 2024) |
| EndedAt: 2024-04-16 07:06:45 -0400 (Tue, 16 Apr 2024) |
| EllapsedTime: 37.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GOSemSim_2.28.1.zip |
| PackageFileSize: 1.213 MiB |
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### Running command:
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### rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSemSim.buildbin-libdir GOSemSim_2.28.1.tar.gz
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* installing *source* package 'GOSemSim' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const std::string&, const std::string&)':
ICmethod.cpp:82:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
82 | for (std::size_t i=0; i < ic_.size(); i++ ) {
| ~~^~~~~~~~~~~~
ICmethod.cpp:88:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
88 | for (std::size_t i=0; i < ic_.size(); i++ ) {
| ~~^~~~~~~~~~~~
ICmethod.cpp:118:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
118 | for (std::size_t i=0; i < anc_.size(); i++ ) {
| ~~^~~~~~~~~~~~~
ICmethod.cpp:131:30: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
131 | for ( std::size_t i = 0; i < id1_.size(); i++ ) {
| ~~^~~~~~~~~~~~~
ICmethod.cpp:138:34: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
138 | for ( std::size_t j = 0; j < id2_.size(); j++ ) {
| ~~^~~~~~~~~~~~~
ICmethod.cpp:165:34: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
165 | for ( std::size_t j = 0; j < id2_.size(); j++ ) {
| ~~^~~~~~~~~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/GOSemSim.buildbin-libdir/00LOCK-GOSemSim/00new/GOSemSim/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GOSemSim' as GOSemSim_2.28.1.zip
* DONE (GOSemSim)