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This page was generated on 2023-04-20 12:50:29 -0400 (Thu, 20 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-04-19 r84288) -- "Unsuffered Consequences" 3941
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for GAPGOM on nebbiolo2


To the developers/maintainers of the GAPGOM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GAPGOM.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 751/2223HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GAPGOM 1.15.1  (landing page)
Rezvan Ehsani
Snapshot Date: 2023-04-19 23:55:56 -0400 (Wed, 19 Apr 2023)
git_url: https://git.bioconductor.org/packages/GAPGOM
git_branch: devel
git_last_commit: 0b8662d
git_last_commit_date: 2023-03-30 12:41:51 -0400 (Thu, 30 Mar 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped

Summary

Package: GAPGOM
Version: 1.15.1
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GAPGOM
StartedAt: 2023-04-20 04:45:24 -0400 (Thu, 20 Apr 2023)
EndedAt: 2023-04-20 04:46:07 -0400 (Thu, 20 Apr 2023)
EllapsedTime: 42.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GAPGOM
###
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* checking for file ‘GAPGOM/DESCRIPTION’ ... OK
* preparing ‘GAPGOM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GAPGOM.Rmd’ using rmarkdown
Quitting from lines 130-142 (GAPGOM.Rmd) 
Error: processing vignette 'GAPGOM.Rmd' failed with diagnostics:
could not find function "ExpressionSet"
--- failed re-building ‘GAPGOM.Rmd’

--- re-building ‘benchmarks.Rmd’ using rmarkdown
--- finished re-building ‘benchmarks.Rmd’

SUMMARY: processing the following file failed:
  ‘GAPGOM.Rmd’

Error: Vignette re-building failed.
Execution halted