Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-04 11:37:21 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 749/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
FoldGO 1.20.0 (landing page) Daniil Wiebe
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the FoldGO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FoldGO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: FoldGO |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:FoldGO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings FoldGO_1.20.0.tar.gz |
StartedAt: 2024-03-03 20:41:05 -0500 (Sun, 03 Mar 2024) |
EndedAt: 2024-03-03 20:43:52 -0500 (Sun, 03 Mar 2024) |
EllapsedTime: 166.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: FoldGO.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:FoldGO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings FoldGO_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/FoldGO.Rcheck’ * using R version 4.3.2 Patched (2023-11-01 r85457) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘FoldGO/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘FoldGO’ version ‘1.20.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘FoldGO’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (5) fagroupstopgo_class.Rd:16: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:17: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:18-19: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:20-21: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:22: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:23: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:25: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:26-27: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:28-29: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:30-31: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:32-33: \item in \describe must have non-empty label checkRd: (5) fagroupstopgo_class.Rd:42: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:21: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:22: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:23: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:24-25: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:26-27: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:35: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:36: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:37: \item in \describe must have non-empty label checkRd: (5) foldspectest_class.Rd:38: \item in \describe must have non-empty label checkRd: (5) gafreader_class.Rd:19: \item in \describe must have non-empty label checkRd: (5) gafreader_class.Rd:20: \item in \describe must have non-empty label checkRd: (5) gafreader_class.Rd:28: \item in \describe must have non-empty label checkRd: (5) gafreader_class.Rd:29: \item in \describe must have non-empty label checkRd: (5) gafreader_class.Rd:37-38: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:24-25: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:26: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:27: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:35-36: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:37-38: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:39: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:40: \item in \describe must have non-empty label checkRd: (5) genegroups_class.Rd:41: \item in \describe must have non-empty label * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fagroupstopgo_class 6.459 0.230 6.736 plot-FoldSpecTest-ANY-method 5.299 0.058 5.551 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.18-bioc/meat/FoldGO.Rcheck/00check.log’ for details.
FoldGO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL FoldGO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘FoldGO’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘getAnnotation’ with signature ‘"MgsaSets"’: no definition for class “MgsaSets” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FoldGO)
FoldGO.Rcheck/FoldGO-Ex.timings
name | user | system | elapsed | |
examdata_bg | 0.002 | 0.001 | 0.004 | |
examdata_degs | 0.000 | 0.001 | 0.002 | |
examdata_objs | 0.001 | 0.002 | 0.004 | |
fagroupstopgo_class | 6.459 | 0.230 | 6.736 | |
foldspectest_class | 2.995 | 0.067 | 3.079 | |
gafreader_class | 2.962 | 0.810 | 3.816 | |
genegroups_class | 0.029 | 0.048 | 0.077 | |
getAnnotation | 0.001 | 0.000 | 0.000 | |
getWholeIntName | 2.862 | 0.087 | 2.969 | |
plot-FoldSpecTest-ANY-method | 5.299 | 0.058 | 5.551 | |