##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL CardinalIO
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library'
* installing *source* package 'CardinalIO' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c CardinalIO.cpp -o CardinalIO.o
In file included from CardinalIO.h:5,
                 from CardinalIO.cpp:2:
imzML.h: In member function 'int imzML::get_params(pugi::xml_node, int, SEXP, SEXP)':
imzML.h:346:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  346 |                         while ( node && i < count ) {
      |                                         ~~^~~~~~~
imzML.h:367:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  367 |                         if ( i != count )
      |                              ~~^~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
In file included from CardinalIO.h:5,
                 from init.cpp:3:
imzML.h: In member function 'int imzML::get_params(pugi::xml_node, int, SEXP, SEXP)':
imzML.h:346:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  346 |                         while ( node && i < count ) {
      |                                         ~~^~~~~~~
imzML.h:367:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  367 |                         if ( i != count )
      |                              ~~^~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pugixml.cpp -o pugixml.o
pugixml.cpp:2303:23: warning: 'void pugi::impl::{anonymous}::as_utf8_end(char*, size_t, const wchar_t*, size_t)' defined but not used [-Wunused-function]
 2303 |         PUGI__FN void as_utf8_end(char* buffer, size_t size, const wchar_t* str, size_t length)
      |                       ^~~~~~~~~~~
pugixml.cpp:2297:25: warning: 'size_t pugi::impl::{anonymous}::as_utf8_begin(const wchar_t*, size_t)' defined but not used [-Wunused-function]
 2297 |         PUGI__FN size_t as_utf8_begin(const wchar_t* str, size_t length)
      |                         ^~~~~~~~~~~~~
pugixml.cpp:248:25: warning: 'size_t pugi::impl::{anonymous}::strlength_wide(const wchar_t*)' defined but not used [-Wunused-function]
  248 |         PUGI__FN size_t strlength_wide(const wchar_t* s)
      |                         ^~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o CardinalIO.dll tmp.def CardinalIO.o init.o pugixml.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/R/library/00LOCK-CardinalIO/00new/CardinalIO/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CardinalIO)