Multiple platform build/check report for BioC 3.18 - BUILD results for CSSP on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4729
palomino4	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4463
lconway	macOS 12.6.5 Monterey	x86_64	4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts"	4478
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4464
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the CSSP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CSSP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data CSSP
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* checking for file ‘CSSP/DESCRIPTION’ ... OK
* preparing ‘CSSP’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cssp.rnw’ using Sweave
Warning: Package 'CSSP' is deprecated and will be removed from Bioconductor
  version 3.19
Read mappability file map_chr1.txt for chr1 
Read mappability file map_chr2.txt for chr2 
Read mappability file map_chr3.txt for chr3 
Read mappability file map_chr4.txt for chr4 
Read mappability file map_chr5.txt for chr5 
Read GC file gc_chr1.txt for chromosome chr1 
Read GC file gc_chr2.txt for chromosome chr2 
Read GC file gc_chr3.txt for chromosome chr3 
Read GC file gc_chr4.txt for chromosome chr4 
Read GC file gc_chr5.txt for chromosome chr5 
Read N file n_chr1.txt for chromosome chr1 
Read N file n_chr2.txt for chromosome chr2 
Read N file n_chr3.txt for chromosome chr3 
Read N file n_chr4.txt for chromosome chr4 
Read N file n_chr5.txt for chromosome chr5 
chromosomes in chiptag contains chr1,chr2,chr3,chr4,chr5
chromosomes in inputtag contains chr1,chr2,chr3,chr4,chr5
chromosomes in mappability contains chr1,chr2,chr3,chr4,chr5
chromosomes in GC contains chr1,chr2,chr3,chr4,chr5
chromosomes in N contains chr1,chr2,chr3,chr4,chr5
chiptag contains 201 bins for chromosome chr1
Read in values for 190 bins for chromosome chr1
chiptag contains 201 bins for chromosome chr2
Read in values for 194 bins for chromosome chr2
chiptag contains 201 bins for chromosome chr3
Read in values for 201 bins for chromosome chr3
chiptag contains 201 bins for chromosome chr4
Read in values for 193 bins for chromosome chr4
chiptag contains 201 bins for chromosome chr5
Read in values for 201 bins for chromosome chr5
===Constructing the design matrices===

Error: processing vignette 'cssp.rnw' failed with diagnostics:
 chunk 5 (label = 3) 
Error in splines::bs(map, knots = quantile(map[map < 0.9], prob = seq(0.1,  : 
  non-finite knots

--- failed re-building ‘cssp.rnw’

SUMMARY: processing the following file failed:
  ‘cssp.rnw’

Error: Vignette re-building failed.
Execution halted

BUILD results for CSSP on kunpeng2

Summary

Command output