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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:BiocDockerManager.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings BiocDockerManager_1.11.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/BiocDockerManager.Rcheck’
* using R Under development (unstable) (2023-04-19 r84288)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘BiocDockerManager/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BiocDockerManager’ version ‘1.11.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocDockerManager’ can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'BiocDockerManager' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.18-bioc/meat/BiocDockerManager.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
available 0.828  0.124  10.341
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error in `vapply(tags, `[[`, list(1), "images")`: values must be length 1,
   but FUN(X[[3]]) result is length 2
  Backtrace:
      ▆
   1. └─BiocDockerManager:::.docker_image_digests("bioconductor/bioconductor_docker") at test-dockerhub_api.R:34:4
   2.   └─base::vapply(tags, `[[`, list(1), "images")
  ── Failure ('test-manager.R:24:5'): 'available()' works as expected ────────────
  grepl(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 4 | WARN 0 | SKIP 9 | PASS 16 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘BiocDockerManager.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/BiocDockerManager.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL BiocDockerManager
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘BiocDockerManager’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'BiocDockerManager' is deprecated and will be removed from
  Bioconductor version 3.18
** testing if installed package can be loaded from final location
Warning: Package 'BiocDockerManager' is deprecated and will be removed from
  Bioconductor version 3.18
** testing if installed package keeps a record of temporary installation path
* DONE (BiocDockerManager)

R Under development (unstable) (2023-04-19 r84288) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(BiocDockerManager)

Attaching package: 'BiocDockerManager'

The following objects are masked from 'package:utils':

    help, maintainer

Warning message:
Package 'BiocDockerManager' is deprecated and will be removed from
  Bioconductor version 3.18 
> 
> test_check("BiocDockerManager")
[ FAIL 4 | WARN 0 | SKIP 9 | PASS 16 ]

══ Skipped tests ═══════════════════════════════════════════════════════════════
• 'docker' engine not installed on machine. (9)

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dockerhub_api.R:27:5'): .docker_image_tags_list is as expected ──
"latest" %in% res is not TRUE

`actual`:   FALSE
`expected`: TRUE 
── Failure ('test-dockerhub_api.R:28:5'): .docker_image_tags_list is as expected ──
"RELEASE_3_10" %in% res is not TRUE

`actual`:   FALSE
`expected`: TRUE 
── Error ('test-dockerhub_api.R:34:5'): .docker_image_digests is as expected ───
Error in `vapply(tags, `[[`, list(1), "images")`: values must be length 1,
 but FUN(X[[3]]) result is length 2
Backtrace:
    ▆
 1. └─BiocDockerManager:::.docker_image_digests("bioconductor/bioconductor_docker") at test-dockerhub_api.R:34:4
 2.   └─base::vapply(tags, `[[`, list(1), "images")
── Failure ('test-manager.R:24:5'): 'available()' works as expected ────────────
grepl(...) is not TRUE

`actual`:   FALSE
`expected`: TRUE 

[ FAIL 4 | WARN 0 | SKIP 9 | PASS 16 ]
Error: Test failures
Execution halted