Back to Multiple platform build/check report for BioC 3.18:   simplified   long
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This page was generated on 2023-11-02 11:40:28 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 208/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioMM 1.18.0  (landing page)
Junfang Chen
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/BioMM
git_branch: RELEASE_3_18
git_last_commit: 104d19a
git_last_commit_date: 2023-10-24 11:10:58 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.6.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for BioMM on kunpeng2


To the developers/maintainers of the BioMM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioMM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: BioMM
Version: 1.18.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
StartedAt: 2023-11-01 22:44:52 -0000 (Wed, 01 Nov 2023)
EndedAt: 2023-11-01 22:46:16 -0000 (Wed, 01 Nov 2023)
EllapsedTime: 84.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
###
##############################################################################
##############################################################################


* checking for file ‘BioMM/DESCRIPTION’ ... OK
* preparing ‘BioMM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BioMMtutorial.Rmd’ using rmarkdown

Quitting from lines 307-314 [stage2dataViz] (BioMMtutorial.Rmd)
Error: processing vignette 'BioMMtutorial.Rmd' failed with diagnostics:
BiocParallel errors
  4 remote errors, element index: 1, 14, 27, 40
  48 unevaluated and other errors
  first remote error:
Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : 'row.names' should specify one of the variables

--- failed re-building ‘BioMMtutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘BioMMtutorial.Rmd’

Error: Vignette re-building failed.
Execution halted