Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-04 11:37:09 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" | 4692 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.2 (2023-10-31 ucrt) -- "Eye Holes" | 4445 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 157/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Alex Lewin
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the BGmix package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BGmix.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BGmix |
Version: 1.62.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BGmix |
StartedAt: 2024-03-03 15:58:44 -0500 (Sun, 03 Mar 2024) |
EndedAt: 2024-03-03 15:58:56 -0500 (Sun, 03 Mar 2024) |
EllapsedTime: 12.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BGmix ### ############################################################################## ############################################################################## * checking for file ‘BGmix/DESCRIPTION’ ... OK * preparing ‘BGmix’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘BGmix’ ... ** using staged installation checking for gcc... clang -arch x86_64 checking for C compiler default output file name... rm: a.out.dSYM: is a directory a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch x86_64 accepts -g... yes checking for clang -arch x86_64 option to accept ISO C89... none needed checking for clang -arch x86_64 option to accept ISO C99... none needed checking for cos in -lm... yes checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I ../boostIncl -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -falign-functions=64 -Wall -g -O2 -DUSING_R -c BGmix_main.cpp -o BGmix_main.o In file included from BGmix_main.cpp:25: In file included from ./updates_BGmix.h:1: In file included from ./rand.hh:32: In file included from ../boostIncl/boost/random.hpp:70: ../boostIncl/boost/random/uniform_on_sphere.hpp:55:25: error: no member named 'bind2nd' in namespace 'std' std::bind2nd(std::divides<RealType>(), sqrt(sqsum))); ~~~~~^ 1 error generated. make: *** [BGmix_main.o] Error 1 ERROR: compilation failed for package ‘BGmix’ * removing ‘/private/tmp/RtmpYPQTVj/Rinst17e38394562fe/BGmix’ ----------------------------------- ERROR: package installation failed