Back to Multiple platform build/check report for BioC 3.18:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-03-04 11:37:09 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 157/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BGmix 1.62.0  (landing page)
Alex Lewin
Snapshot Date: 2024-03-03 14:05:05 -0500 (Sun, 03 Mar 2024)
git_url: https://git.bioconductor.org/packages/BGmix
git_branch: RELEASE_3_18
git_last_commit: f73b5f7
git_last_commit_date: 2023-10-24 09:39:13 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for BGmix on lconway


To the developers/maintainers of the BGmix package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BGmix.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BGmix
Version: 1.62.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BGmix
StartedAt: 2024-03-03 15:58:44 -0500 (Sun, 03 Mar 2024)
EndedAt: 2024-03-03 15:58:56 -0500 (Sun, 03 Mar 2024)
EllapsedTime: 12.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BGmix
###
##############################################################################
##############################################################################


* checking for file ‘BGmix/DESCRIPTION’ ... OK
* preparing ‘BGmix’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘BGmix’ ...
** using staged installation
checking for gcc... clang -arch x86_64
checking for C compiler default output file name... rm: a.out.dSYM: is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ISO C89... none needed
checking for clang -arch x86_64 option to accept ISO C99... none needed
checking for cos in -lm... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I ../boostIncl  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -falign-functions=64 -Wall -g -O2 -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
In file included from BGmix_main.cpp:25:
In file included from ./updates_BGmix.h:1:
In file included from ./rand.hh:32:
In file included from ../boostIncl/boost/random.hpp:70:
../boostIncl/boost/random/uniform_on_sphere.hpp:55:25: error: no member named 'bind2nd' in namespace 'std'
                   std::bind2nd(std::divides<RealType>(), sqrt(sqsum)));
                   ~~~~~^
1 error generated.
make: *** [BGmix_main.o] Error 1
ERROR: compilation failed for package ‘BGmix’
* removing ‘/private/tmp/RtmpYPQTVj/Rinst17e38394562fe/BGmix’
      -----------------------------------
ERROR: package installation failed