Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:43 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the twoddpcr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 2137/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
twoddpcr 1.23.0 (landing page) Anthony Chiu
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
Package: twoddpcr |
Version: 1.23.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings twoddpcr_1.23.0.tar.gz |
StartedAt: 2023-04-12 10:04:44 -0400 (Wed, 12 Apr 2023) |
EndedAt: 2023-04-12 10:08:54 -0400 (Wed, 12 Apr 2023) |
EllapsedTime: 250.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: twoddpcr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings twoddpcr_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/twoddpcr.Rcheck’ * using R Under development (unstable) (2023-02-14 r83833) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 * running under: Ubuntu 20.04.6 LTS * using session charset: UTF-8 * checking for file ‘twoddpcr/DESCRIPTION’ ... OK * this is package ‘twoddpcr’ version ‘1.23.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘twoddpcr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed knnClassify 7.843 0.060 7.905 ggplot.well 6.839 0.136 6.975 gridClassify 5.127 0.116 5.244 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘twoddpcr.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(twoddpcr) > > test_check("twoddpcr") [ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ] > > proc.time() user system elapsed 5.811 0.226 6.019
twoddpcr.Rcheck/twoddpcr-Ex.timings
name | user | system | elapsed | |
amplitudes | 0.373 | 0.021 | 0.392 | |
basicsSummary | 0.005 | 0.000 | 0.005 | |
castSummary | 0.018 | 0.000 | 0.017 | |
classCov | 0.046 | 0.004 | 0.050 | |
classMeans | 0.062 | 0.000 | 0.062 | |
classStats | 0.068 | 0.000 | 0.067 | |
clusterCentres | 0.806 | 0.011 | 0.818 | |
copiesSummary | 0.005 | 0.001 | 0.005 | |
ddpcrPlate-class | 0.323 | 0.003 | 0.329 | |
ddpcrWell-class | 0.031 | 0.000 | 0.032 | |
ddpcrWell-methods | 0.468 | 0.000 | 0.468 | |
dropletPlot | 4.274 | 0.091 | 4.366 | |
exportTable | 0.145 | 0.010 | 0.156 | |
extractPlateName | 0.001 | 0.000 | 0.000 | |
extractWellNames | 0.001 | 0.000 | 0.000 | |
facetPlot | 2.101 | 0.088 | 2.189 | |
flatPlot | 4.561 | 0.084 | 4.645 | |
fullCopiesSummary | 0.005 | 0.000 | 0.005 | |
fullCountsSummary | 0.023 | 0.000 | 0.023 | |
ggplot.well | 6.839 | 0.136 | 6.975 | |
gridClassify | 5.127 | 0.116 | 5.244 | |
heatPlot | 1.633 | 0.012 | 1.645 | |
kmeansClassify | 0.994 | 0.008 | 1.002 | |
knnClassify | 7.843 | 0.060 | 7.905 | |
mahalanobisRain | 0.688 | 0.000 | 0.687 | |
mutantCopiesSummary | 0.004 | 0.000 | 0.003 | |
numDroplets | 0.291 | 0.000 | 0.292 | |
parseClusterCounts | 0.011 | 0.000 | 0.011 | |
plateClassification | 1.041 | 0.008 | 1.049 | |
plateClassificationMethod | 0.383 | 0.000 | 0.383 | |
plateSummary | 2.348 | 0.008 | 2.357 | |
positiveCounts | 0.026 | 0.000 | 0.026 | |
readCSVDataFrame | 0.046 | 0.000 | 0.046 | |
relabelClasses | 0.303 | 0.000 | 0.303 | |
removeDropletClasses | 0.547 | 0.004 | 0.552 | |
renormalisePlate | 2.793 | 0.012 | 2.805 | |
sdRain | 3.288 | 0.052 | 3.340 | |
setChannelNames | 0.001 | 0.000 | 0.001 | |
setDropletVolume | 0 | 0 | 0 | |
sortDataFrame | 0.002 | 0.000 | 0.002 | |
sortWells | 0.274 | 0.004 | 0.277 | |
thresholdClassify | 1.769 | 0.036 | 1.804 | |
wellClassification | 0.013 | 0.005 | 0.017 | |
wellClassificationMethod | 0.027 | 0.002 | 0.030 | |
whiteTheme | 1.488 | 0.008 | 1.496 | |
wildTypeCopiesSummary | 0.003 | 0.000 | 0.003 | |