| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:42 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the supraHex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 2022/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.37.0 (landing page) Hai Fang
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
| Package: supraHex |
| Version: 1.37.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings supraHex_1.37.0.tar.gz |
| StartedAt: 2023-04-12 09:47:38 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 09:49:00 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 82.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings supraHex_1.37.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/supraHex.Rcheck’
* using R Under development (unstable) (2023-02-14 r83833)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.37.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘supraHex_vignettes.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.060 | 0.016 | 0.075 | |
| sCompReorder | 2.412 | 0.156 | 2.568 | |
| sDistance | 0.309 | 0.000 | 0.309 | |
| sDmat | 0.327 | 0.000 | 0.328 | |
| sDmatCluster | 0.499 | 0.000 | 0.499 | |
| sDmatMinima | 0.355 | 0.000 | 0.356 | |
| sHexDist | 0.007 | 0.000 | 0.007 | |
| sHexGrid | 0.001 | 0.000 | 0.002 | |
| sHexGridVariant | 0.001 | 0.000 | 0.001 | |
| sHexPolygon | 0.112 | 0.000 | 0.112 | |
| sInitial | 0.007 | 0.000 | 0.007 | |
| sMapOverlay | 0.376 | 0.028 | 0.403 | |
| sNeighAny | 0.011 | 0.000 | 0.011 | |
| sNeighDirect | 0.013 | 0.000 | 0.013 | |
| sPipeline | 0.000 | 0.000 | 0.001 | |
| sTopology | 0.035 | 0.000 | 0.035 | |
| sTrainBatch | 0.041 | 0.000 | 0.041 | |
| sTrainSeq | 0.287 | 0.008 | 0.295 | |
| sTrainology | 0.007 | 0.000 | 0.006 | |
| sWriteData | 0.702 | 0.048 | 0.761 | |
| visColoralpha | 0.005 | 0.000 | 0.006 | |
| visColorbar | 0.038 | 0.000 | 0.038 | |
| visColormap | 0.006 | 0.000 | 0.006 | |
| visCompReorder | 3.182 | 0.128 | 3.311 | |
| visDmatCluster | 0 | 0 | 0 | |
| visDmatHeatmap | 0 | 0 | 0 | |
| visHeatmap | 0.077 | 0.000 | 0.077 | |
| visHeatmapAdv | 0.308 | 0.000 | 0.308 | |
| visHexAnimate | 0.001 | 0.000 | 0.001 | |
| visHexBarplot | 0.735 | 0.024 | 0.758 | |
| visHexComp | 0.278 | 0.000 | 0.278 | |
| visHexGrid | 0.276 | 0.004 | 0.280 | |
| visHexMapping | 1.438 | 0.000 | 1.439 | |
| visHexMulComp | 1.011 | 0.016 | 1.027 | |
| visHexPattern | 1.713 | 0.048 | 1.761 | |
| visKernels | 0.009 | 0.004 | 0.013 | |
| visTreeBSclust | 0.001 | 0.000 | 0.001 | |
| visTreeBootstrap | 0.000 | 0.000 | 0.001 | |
| visVp | 0.015 | 0.000 | 0.015 | |