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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:onlineFDR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings onlineFDR_2.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/onlineFDR.Rcheck’
* using R Under development (unstable) (2023-03-15 r83984)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘onlineFDR/DESCRIPTION’ ... OK
* this is package ‘onlineFDR’ version ‘2.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘onlineFDR’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘advanced-usage.Rmd’ using ‘UTF-8’... OK
  ‘onlineFDR.Rmd’ using ‘UTF-8’... OK
  ‘theory.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/onlineFDR.Rcheck/00check.log’
for details.

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL onlineFDR
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘onlineFDR’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c addis.cpp -o addis.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c addis_spending.cpp -o addis_spending.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c alphainvesting.cpp -o alphainvesting.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c lond.cpp -o lond.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c londstar.cpp -o londstar.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c lord.cpp -o lord.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c lordstar.cpp -o lordstar.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c online_fallback.cpp -o online_fallback.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c saffron.cpp -o saffron.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c saffronstar.cpp -o saffronstar.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o onlineFDR.so RcppExports.o addis.o addis_spending.o alphainvesting.o lond.o londstar.o lord.o lordstar.o online_fallback.o saffron.o saffronstar.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-onlineFDR/00new/onlineFDR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
Error installing renv:
======================
* installing *source* package ‘renv’ ...
** package ‘renv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’
* removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83984/x86_64-pc-linux-gnu/renv’
Warning messages:
1: In system2(r, args, stdout = TRUE, stderr = TRUE) :
  running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83984/x86_64-pc-linux-gnu' '/tmp/RtmpNWYo5p/renv_0.15.5.tar.gz' 2>&1' had status 1
2: Failed to find an renv installation: the project will not be loaded.
Use `renv::activate()` to re-initialize the project. 
** help
*** installing help indices
*** copying figures
** building package indices
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
Error installing renv:
======================
* installing *source* package ‘renv’ ...
** package ‘renv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’
* removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83984/x86_64-pc-linux-gnu/renv’
Warning messages:
1: In system2(r, args, stdout = TRUE, stderr = TRUE) :
  running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83984/x86_64-pc-linux-gnu' '/tmp/RtmpYKRZj0/renv_0.15.5.tar.gz' 2>&1' had status 1
2: Failed to find an renv installation: the project will not be loaded.
Use `renv::activate()` to re-initialize the project. 
** installing vignettes
** testing if installed package can be loaded from temporary location
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
Error installing renv:
======================
* installing *source* package ‘renv’ ...
** package ‘renv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’
* removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83984/x86_64-pc-linux-gnu/renv’
Warning messages:
1: In system2(r, args, stdout = TRUE, stderr = TRUE) :
  running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83984/x86_64-pc-linux-gnu' '/tmp/RtmpsXmJSO/renv_0.15.5.tar.gz' 2>&1' had status 1
2: Failed to find an renv installation: the project will not be loaded.
Use `renv::activate()` to re-initialize the project. 
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
* Successfully installed and loaded renv 0.15.5.
ℹ Using R 4.3.0 (lockfile was generated with R 4.2.0)
Warning message:
This project is configured to use Bioconductor '3.16', which is not compatible with R '4.3.0'.
Use 'renv::init(bioconductor = TRUE)' to re-initialize this project with the latest Bioconductor release. 
** testing if installed package keeps a record of temporary installation path
* DONE (onlineFDR)

R Under development (unstable) (2023-03-15 r83984) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(onlineFDR)
> 
> test_check("onlineFDR")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 181 ]
> 
> proc.time()
   user  system elapsed 
  1.733   0.069   1.789