| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:37 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the heatmaps package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/heatmaps.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 907/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| heatmaps 1.23.0 (landing page) Malcolm Perry
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
| Package: heatmaps |
| Version: 1.23.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:heatmaps.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings heatmaps_1.23.0.tar.gz |
| StartedAt: 2023-04-12 06:46:13 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 06:49:36 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 202.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: heatmaps.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:heatmaps.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings heatmaps_1.23.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/heatmaps.Rcheck’
* using R Under development (unstable) (2023-02-14 r83833)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* checking for file ‘heatmaps/DESCRIPTION’ ... OK
* this is package ‘heatmaps’ version ‘1.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘heatmaps’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
extdata 6.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makeGaussian2D: no visible binding for global variable ‘dnorm’
Undefined global functions or variables:
dnorm
Consider adding
importFrom("stats", "dnorm")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘heatmaps.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.17-bioc/meat/heatmaps.Rcheck/00check.log’
for details.
heatmaps.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL heatmaps ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘heatmaps’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘scale’ in package ‘heatmaps’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (heatmaps)
heatmaps.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
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> library(testthat)
> library(heatmaps)
Attaching package: 'heatmaps'
The following object is masked from 'package:base':
scale
>
> test_check("heatmaps")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
>
> proc.time()
user system elapsed
6.473 0.317 6.774
heatmaps.Rcheck/heatmaps-Ex.timings
| name | user | system | elapsed | |
| CoverageHeatmap | 0.177 | 0.019 | 0.198 | |
| Heatmap-class | 0.013 | 0.000 | 0.013 | |
| Heatmap | 0.011 | 0.000 | 0.011 | |
| PWMScanHeatmap | 0.034 | 0.004 | 0.038 | |
| PatternHeatmap | 0.055 | 0.004 | 0.059 | |
| coords | 0.008 | 0.004 | 0.012 | |
| default_color | 0.015 | 0.000 | 0.015 | |
| getScale | 0 | 0 | 0 | |
| heatmapOptions | 0 | 0 | 0 | |
| image | 0.012 | 0.000 | 0.012 | |
| label | 0.011 | 0.000 | 0.011 | |
| metadata | 0.007 | 0.004 | 0.011 | |
| nseq | 0.011 | 0.000 | 0.011 | |
| plotHeatmap | 0.028 | 0.008 | 0.036 | |
| plotHeatmapList | 0.076 | 0.004 | 0.080 | |
| plotHeatmapMeta | 0.034 | 0.000 | 0.035 | |
| plotPatternDensityMap | 0.876 | 0.016 | 0.892 | |
| plot_clusters | 0.064 | 0.000 | 0.065 | |
| plot_legend | 0.017 | 0.000 | 0.017 | |
| scale | 0.011 | 0.000 | 0.011 | |
| smoothHeatmap | 0.047 | 0.000 | 0.048 | |
| xm | 0.007 | 0.004 | 0.011 | |
| ym | 0.012 | 0.000 | 0.012 | |