| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:24 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the flowcatchR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowcatchR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 701/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowcatchR 1.33.0 (landing page) Federico Marini
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
| Package: flowcatchR |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings flowcatchR_1.33.0.tar.gz |
| StartedAt: 2023-04-11 20:19:24 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 20:20:58 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 94.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowcatchR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings flowcatchR_1.33.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/flowcatchR.Rcheck’
* using R version 4.3.0 alpha (2023-04-03 r84154)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘flowcatchR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowcatchR’ version ‘1.33.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowcatchR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘EBImage’ which was already attached by Depends.
Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘flowcatchr_vignette.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/flowcatchR.Rcheck/00check.log’
for details.
flowcatchR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL flowcatchR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘flowcatchR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowcatchR)
flowcatchR.Rcheck/flowcatchR-Ex.timings
| name | user | system | elapsed | |
| Frames | 0.299 | 0.064 | 0.363 | |
| add.contours | 0.000 | 0.001 | 0.002 | |
| channel.Frames | 0.277 | 0.000 | 0.277 | |
| crop.Frames | 0.096 | 0.008 | 0.104 | |
| export.Frames | 0.000 | 0.001 | 0.001 | |
| export.particles | 0 | 0 | 0 | |
| inspect.Frames | 0.001 | 0.000 | 0.001 | |
| kinematics | 0.207 | 0.009 | 0.216 | |
| length.Frames | 0.215 | 0.000 | 0.216 | |
| link.particles | 0.09 | 0.00 | 0.09 | |
| matchTrajToParticles | 0.167 | 0.004 | 0.170 | |
| normalizeFrames | 1.423 | 0.076 | 1.499 | |
| particles | 0.000 | 0.001 | 0.001 | |
| penaltyFunctionGenerator | 0 | 0 | 0 | |
| plot.TrajectorySet | 0.156 | 0.002 | 0.158 | |
| plot2D.TrajectorySet | 0.262 | 0.012 | 0.273 | |
| preprocess.Frames | 0.498 | 0.059 | 0.560 | |
| read.Frames | 0 | 0 | 0 | |
| read.particles | 0 | 0 | 0 | |
| rotate.Frames | 0.403 | 0.139 | 0.543 | |
| select.Frames | 0.609 | 0.127 | 0.737 | |
| select.particles | 0.020 | 0.003 | 0.022 | |
| shinyFlow | 0 | 0 | 0 | |
| show-Frames-method | 0.080 | 0.000 | 0.081 | |
| show-KinematicsFeatures-method | 0.160 | 0.064 | 0.224 | |
| show-KinematicsFeaturesSet-method | 0.399 | 0.015 | 0.415 | |
| show-LinkedParticleSet-method | 0.138 | 0.002 | 0.140 | |
| show-ParticleSet-method | 0.005 | 0.000 | 0.007 | |
| show-TrajectorySet-method | 0.158 | 0.005 | 0.164 | |
| snap | 0 | 0 | 0 | |
| trajectories | 0.167 | 0.000 | 0.167 | |