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This page was generated on 2023-04-12 10:55:24 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for fcoex on nebbiolo1


To the developers/maintainers of the fcoex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcoex.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 681/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcoex 1.13.0  (landing page)
Tiago Lubiana
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/fcoex
git_branch: devel
git_last_commit: 78bae2d
git_last_commit_date: 2022-11-01 11:20:57 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    ERROR  

Summary

Package: fcoex
Version: 1.13.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fcoex
StartedAt: 2023-04-11 16:30:00 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 16:31:26 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 86.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fcoex
###
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* checking for file ‘fcoex/DESCRIPTION’ ... OK
* preparing ‘fcoex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fcoex.Rmd’ using rmarkdown
Quitting from lines 91-92 (fcoex.Rmd) 
Error: processing vignette 'fcoex.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘fcoex.Rmd’

--- re-building ‘fcoex_and_seurat.Rmd’ using rmarkdown
Quitting from lines 29-42 (fcoex_and_seurat.Rmd) 
Error: processing vignette 'fcoex_and_seurat.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘fcoex_and_seurat.Rmd’

SUMMARY: processing the following files failed:
  ‘fcoex.Rmd’ ‘fcoex_and_seurat.Rmd’

Error: Vignette re-building failed.
Execution halted