Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2023-04-12 10:55:32 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Travel package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Travel.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 2110/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Travel 1.7.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
Package: Travel |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL Travel |
StartedAt: 2023-04-11 15:03:10 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 15:03:42 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 31.5 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL Travel ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘Travel’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c Cpp_interface.cpp -o Cpp_interface.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c altfile_operations.cpp -o altfile_operations.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c altmmap_operations.cpp -o altmmap_operations.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c altrep_manager.cpp -o altrep_manager.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c class_Cache_block.cpp -o class_Cache_block.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o In file included from class_Filesystem_file_data.h:5, from class_Filesystem_file_data.cpp:1: class_Cache_block.h:10:5: error: ‘size_t’ does not name a type 10 | size_t size; | ^~~~~~ class_Cache_block.h:1:1: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’? +++ |+#include <cstddef> 1 | #ifndef HEADER_CACHE_BLOCK class_Cache_block.h:11:5: error: ‘size_t’ does not name a type 11 | size_t *counter = nullptr; | ^~~~~~ class_Cache_block.h:11:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’? class_Cache_block.h:14:23: error: expected ‘)’ before ‘size’ 14 | Cache_block(size_t size); | ~ ^~~~~ | ) class_Cache_block.h:21:5: error: ‘size_t’ does not name a type 21 | size_t use_count() const; | ^~~~~~ class_Cache_block.h:21:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’? class_Cache_block.h:23:5: error: ‘size_t’ does not name a type 23 | size_t get_size() const; | ^~~~~~ class_Cache_block.h:23:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’? class_Cache_block.h:27:5: error: ‘size_t’ does not name a type 27 | size_t get_serialize_size() const; | ^~~~~~ class_Cache_block.h:27:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’? class_Filesystem_file_data.cpp: In member function ‘size_t Filesystem_file_data::get_serialize_size()’: class_Filesystem_file_data.cpp:70:26: error: ‘const class Cache_block’ has no member named ‘get_serialize_size’ 70 | size += i.second.get_serialize_size(); | ^~~~~~~~~~~~~~~~~~ class_Filesystem_file_data.cpp: In member function ‘void Filesystem_file_data::serialize(void*)’: class_Filesystem_file_data.cpp:92:39: error: ‘const class Cache_block’ has no member named ‘get_serialize_size’ 92 | size_t buffer_size = i.second.get_serialize_size(); | ^~~~~~~~~~~~~~~~~~ class_Filesystem_file_data.cpp: In member function ‘void Filesystem_cache_index_iterator::compute_block_info()’: class_Filesystem_file_data.cpp:177:39: error: ‘class Cache_block’ has no member named ‘get_size’ 177 | block_length = block_iter->second.get_size() / type_size; | ^~~~~~~~ make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:198: class_Filesystem_file_data.o] Error 1 ERROR: compilation failed for package ‘Travel’ * removing ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/Travel’