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This page was generated on 2023-04-12 10:55:30 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for RNAdecay on nebbiolo1


To the developers/maintainers of the RNAdecay package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAdecay.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1721/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAdecay 1.19.0  (landing page)
Reed Sorenson
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/RNAdecay
git_branch: devel
git_last_commit: d17fd6f
git_last_commit_date: 2022-11-01 11:17:45 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  

Summary

Package: RNAdecay
Version: 1.19.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RNAdecay
StartedAt: 2023-04-11 15:26:09 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 15:30:51 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 281.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RNAdecay
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘RNAdecay’ ...
** using staged installation
** libs
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_1sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_dExp_1sse.cpp -o general_dExp_1sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_1sse.so general_dExp_1sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_1sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_Exp_1sse.cpp -o general_Exp_1sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_1sse.so general_Exp_1sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_2sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_dExp_2sse.cpp -o general_dExp_2sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_2sse.so general_dExp_2sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_2sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_Exp_2sse.cpp -o general_Exp_2sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_2sse.so general_Exp_2sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_3sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_dExp_3sse.cpp -o general_dExp_3sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_3sse.so general_dExp_3sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_3sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_Exp_3sse.cpp -o general_Exp_3sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_3sse.so general_Exp_3sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_4sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_dExp_4sse.cpp -o general_dExp_4sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_4sse.so general_dExp_4sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_4sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fpic  -g -O2  -Wall -c general_Exp_4sse.cpp -o general_Exp_4sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_4sse.so general_Exp_4sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-RNAdecay/00new/RNAdecay/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNAdecay)