Back to Build/check report for BioC 3.17 experimental data |
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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 252/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
msdata 0.40.0 (landing page) Steffen Neumann
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the msdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: msdata |
Version: 0.40.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings msdata_0.40.0.tar.gz |
StartedAt: 2023-10-12 11:44:08 -0400 (Thu, 12 Oct 2023) |
EndedAt: 2023-10-12 11:45:44 -0400 (Thu, 12 Oct 2023) |
EllapsedTime: 95.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: msdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings msdata_0.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/msdata.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘msdata/DESCRIPTION’ ... OK * this is package ‘msdata’ version ‘0.40.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘msdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 477.9Mb sub-directories of 1Mb or more: CE-MS 1.2Mb TripleTOF-SWATH 51.3Mb cdf 2.0Mb fticr-mzML 6.2Mb ident 1.4Mb iontrap 8.5Mb lockmass 2.6Mb microtofq 9.0Mb mzid 3.9Mb proteomics 355.8Mb quant 4.1Mb sciex 31.6Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed msdata 9.408 0.452 9.864 * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-data-experiment/meat/msdata.Rcheck/00check.log’ for details.
msdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL msdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘msdata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (msdata)
msdata.Rcheck/msdata-Ex.timings
name | user | system | elapsed | |
msdata | 9.408 | 0.452 | 9.864 | |
proteomics | 0.799 | 0.056 | 0.871 | |
sciexdata | 0.001 | 0.000 | 0.001 | |