Y-h. Taguchi
| Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/miRNATarget |
| git_branch: RELEASE_3_17 |
| git_last_commit: 149b5b1 |
| git_last_commit_date: 2023-04-25 09:54:23 -0400 (Tue, 25 Apr 2023) |
| Back to Build/check report for BioC 3.17 experimental data |
|
This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 243/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| miRNATarget 1.38.0 (landing page) Y-h. Taguchi
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | |||||||
|
To the developers/maintainers of the miRNATarget package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: miRNATarget |
| Version: 1.38.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings miRNATarget_1.38.0.tar.gz |
| StartedAt: 2023-10-12 11:42:56 -0400 (Thu, 12 Oct 2023) |
| EndedAt: 2023-10-12 11:44:18 -0400 (Thu, 12 Oct 2023) |
| EllapsedTime: 82.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: miRNATarget.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings miRNATarget_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 54.7Mb
sub-directories of 1Mb or more:
data 54.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘miRNATarget.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.17-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.
miRNATarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL miRNATarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘miRNATarget’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRNATarget)
miRNATarget.Rcheck/miRNATarget-Ex.timings
| name | user | system | elapsed | |
| HS_conv_id | 0.057 | 0.000 | 0.056 | |
| HS_refseq_to_affy_hc_g110 | 0.004 | 0.000 | 0.005 | |
| HS_refseq_to_affy_hg_focus | 0.016 | 0.000 | 0.017 | |
| HS_refseq_to_affy_hg_u133_plus_2 | 0.055 | 0.003 | 0.060 | |
| HS_refseq_to_affy_hg_u133a | 0.036 | 0.000 | 0.037 | |
| HS_refseq_to_affy_hg_u133a_2 | 0.035 | 0.000 | 0.035 | |
| HS_refseq_to_affy_hg_u133b | 0.017 | 0.000 | 0.017 | |
| HS_refseq_to_affy_hg_u95a | 0.023 | 0.000 | 0.023 | |
| HS_refseq_to_affy_hg_u95av2 | 0.013 | 0.007 | 0.021 | |
| HS_refseq_to_affy_hg_u95b | 0.013 | 0.000 | 0.014 | |
| HS_refseq_to_affy_hg_u95c | 0.01 | 0.00 | 0.01 | |
| HS_refseq_to_affy_hg_u95d | 0.005 | 0.000 | 0.006 | |
| HS_refseq_to_affy_hg_u95e | 0.01 | 0.00 | 0.01 | |
| HS_refseq_to_affy_huex_1_0_st_v2 | 0.895 | 0.035 | 0.930 | |
| HS_refseq_to_affy_hugene_1_0_st_v1 | 0.047 | 0.004 | 0.050 | |
| HS_refseq_to_affy_hugenefl | 0.010 | 0.004 | 0.014 | |
| HS_refseq_to_affy_u133_x3p | 0.070 | 0.003 | 0.074 | |
| HS_refseq_to_agilent_cgh_44b | 0.013 | 0.001 | 0.013 | |
| HS_refseq_to_agilent_wholegenome | 0.074 | 0.000 | 0.073 | |
| HS_refseq_to_canonical_transcript_stable_id | 0.070 | 0.000 | 0.071 | |
| HS_refseq_to_ccds | 0.039 | 0.000 | 0.040 | |
| HS_refseq_to_codelink | 0.041 | 0.000 | 0.041 | |
| HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.002 | 0.000 | 0.002 | |
| HS_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.002 | 0.000 | 0.001 | |
| HS_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.000 | 0.001 | 0.001 | |
| HS_refseq_to_embl | 0.719 | 0.034 | 0.753 | |
| HS_refseq_to_ensembl_exon_id | 0.003 | 0.000 | 0.004 | |
| HS_refseq_to_ensembl_gene_id | 0.047 | 0.000 | 0.047 | |
| HS_refseq_to_ensembl_peptide_id | 0.039 | 0.004 | 0.042 | |
| HS_refseq_to_ensembl_transcript_id | 0.055 | 0.000 | 0.055 | |
| HS_refseq_to_entrezgene | 0.044 | 0.004 | 0.047 | |
| HS_refseq_to_hgnc_id | 0.164 | 0.008 | 0.171 | |
| HS_refseq_to_hgnc_symbol | 0.043 | 0.001 | 0.042 | |
| HS_refseq_to_hgnc_transcript_name | 0.048 | 0.000 | 0.047 | |
| HS_refseq_to_illumina_humanht_12 | 0.05 | 0.00 | 0.05 | |
| HS_refseq_to_illumina_humanwg_6_v1 | 0.035 | 0.007 | 0.043 | |
| HS_refseq_to_illumina_humanwg_6_v2 | 0.036 | 0.000 | 0.036 | |
| HS_refseq_to_illumina_humanwg_6_v3 | 0.043 | 0.000 | 0.043 | |
| HS_refseq_to_interpro | 0.114 | 0.000 | 0.115 | |
| HS_refseq_to_ipi | 0.109 | 0.000 | 0.108 | |
| HS_refseq_to_merops | 0.000 | 0.005 | 0.004 | |
| HS_refseq_to_pdb | 0.083 | 0.003 | 0.086 | |
| HS_refseq_to_pfam | 0.063 | 0.004 | 0.067 | |
| HS_refseq_to_phalanx_onearray | 0.040 | 0.000 | 0.039 | |
| HS_refseq_to_protein_id | 1.090 | 0.004 | 1.094 | |
| HS_refseq_to_refseq_dna | 0.054 | 0.000 | 0.054 | |
| HS_refseq_to_refseq_genomic | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_refseq_peptide | 0.087 | 0.000 | 0.087 | |
| HS_refseq_to_rfam | 0.002 | 0.000 | 0.003 | |
| HS_refseq_to_rfam_gene_name | 0.000 | 0.001 | 0.001 | |
| HS_refseq_to_rfam_transcript_name | 0.000 | 0.001 | 0.000 | |
| HS_refseq_to_smart | 0.032 | 0.001 | 0.033 | |
| HS_refseq_to_tigrfam | 0.005 | 0.000 | 0.005 | |
| HS_refseq_to_ucsc | 0.045 | 0.000 | 0.045 | |
| HS_refseq_to_unigene | 0.058 | 0.000 | 0.059 | |
| HS_refseq_to_uniprot_genename | 0.04 | 0.00 | 0.04 | |
| HS_refseq_to_uniprot_genename_transcript_name | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_sptrembl | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_swissprot | 0.001 | 0.001 | 0.002 | |
| HS_refseq_to_uniprot_swissprot_accession | 0.000 | 0.001 | 0.001 | |
| HS_refseq_to_wikigene_id | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_wikigene_name | 0.044 | 0.000 | 0.044 | |
| MM_conv_id | 0.002 | 0.000 | 0.002 | |
| MM_refseq_to_affy_mg_u74a | 0.015 | 0.000 | 0.015 | |
| MM_refseq_to_affy_mg_u74av2 | 0.009 | 0.003 | 0.013 | |
| MM_refseq_to_affy_mg_u74b | 0.011 | 0.000 | 0.012 | |
| MM_refseq_to_affy_mg_u74bv2 | 0.011 | 0.000 | 0.012 | |
| MM_refseq_to_affy_mg_u74c | 0.005 | 0.000 | 0.004 | |
| MM_refseq_to_affy_mg_u74cv2 | 0.006 | 0.000 | 0.005 | |
| MM_refseq_to_affy_moe430a | 0.030 | 0.000 | 0.029 | |
| MM_refseq_to_affy_moe430b | 0.014 | 0.000 | 0.014 | |
| MM_refseq_to_affy_moex_1_0_st_v1 | 0.361 | 0.000 | 0.361 | |
| MM_refseq_to_affy_mogene_1_0_st_v1 | 0.038 | 0.000 | 0.038 | |
| MM_refseq_to_affy_mouse430_2 | 0.039 | 0.000 | 0.038 | |
| MM_refseq_to_affy_mouse430a_2 | 0.023 | 0.003 | 0.027 | |
| MM_refseq_to_affy_mu11ksuba | 0.010 | 0.000 | 0.009 | |
| MM_refseq_to_affy_mu11ksubb | 0.007 | 0.000 | 0.007 | |
| MM_refseq_to_agilent_wholegenome | 0.051 | 0.004 | 0.056 | |
| MM_refseq_to_canonical_transcript_stable_id | 0.054 | 0.000 | 0.054 | |
| MM_refseq_to_ccds | 0.023 | 0.003 | 0.028 | |
| MM_refseq_to_codelink | 0.03 | 0.00 | 0.03 | |
| MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.001 | 0.000 | 0.002 | |
| MM_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.001 | 0.000 | 0.002 | |
| MM_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_embl | 0.278 | 0.004 | 0.282 | |
| MM_refseq_to_ensembl_exon_id | 0.000 | 0.002 | 0.002 | |
| MM_refseq_to_ensembl_gene_id | 0.149 | 0.002 | 0.151 | |
| MM_refseq_to_ensembl_peptide_id | 0.033 | 0.000 | 0.033 | |
| MM_refseq_to_ensembl_transcript_id | 0.035 | 0.000 | 0.035 | |
| MM_refseq_to_entrezgene | 0.032 | 0.000 | 0.032 | |
| MM_refseq_to_fantom | 0.091 | 0.004 | 0.095 | |
| MM_refseq_to_illumina_mousewg_6_v1 | 0.046 | 0.000 | 0.046 | |
| MM_refseq_to_illumina_mousewg_6_v2 | 0.048 | 0.000 | 0.048 | |
| MM_refseq_to_interpro | 0.091 | 0.003 | 0.095 | |
| MM_refseq_to_ipi | 0.000 | 0.001 | 0.002 | |
| MM_refseq_to_merops | 0.001 | 0.002 | 0.003 | |
| MM_refseq_to_mgi_id | 0.034 | 0.000 | 0.034 | |
| MM_refseq_to_mgi_symbol | 0.031 | 0.003 | 0.035 | |
| MM_refseq_to_mgi_transcript_name | 0.038 | 0.000 | 0.038 | |
| MM_refseq_to_pdb | 0.009 | 0.000 | 0.009 | |
| MM_refseq_to_pfam | 0.050 | 0.003 | 0.055 | |
| MM_refseq_to_phalanx_onearray | 0.033 | 0.000 | 0.033 | |
| MM_refseq_to_protein_id | 0.250 | 0.007 | 0.258 | |
| MM_refseq_to_refseq_dna | 0.042 | 0.000 | 0.042 | |
| MM_refseq_to_refseq_peptide | 0.071 | 0.000 | 0.071 | |
| MM_refseq_to_rfam | 0.001 | 0.000 | 0.002 | |
| MM_refseq_to_rfam_gene_name | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_rfam_transcript_name | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_smart | 0.027 | 0.000 | 0.027 | |
| MM_refseq_to_tigrfam | 0.000 | 0.003 | 0.004 | |
| MM_refseq_to_ucsc | 0.037 | 0.000 | 0.037 | |
| MM_refseq_to_unigene | 0.043 | 0.004 | 0.047 | |
| MM_refseq_to_uniprot_genename | 0.034 | 0.000 | 0.034 | |
| MM_refseq_to_uniprot_genename_transcript_name | 0.001 | 0.000 | 0.002 | |
| MM_refseq_to_uniprot_sptrembl | 0.001 | 0.000 | 0.002 | |
| MM_refseq_to_uniprot_swissprot | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_uniprot_swissprot_accession | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_wikigene_id | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_wikigene_name | 0.032 | 0.000 | 0.032 | |
| TBL2 | 1.321 | 0.063 | 1.385 | |
| TBL2_HS | 1.523 | 0.132 | 1.654 | |
| TBL2_MM | 0.824 | 0.100 | 0.924 | |
| conv_id | 0.000 | 0.003 | 0.002 | |
| id_conv | 0.027 | 0.001 | 0.029 | |