Alex Pickering
| Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/ccdata |
| git_branch: RELEASE_3_17 |
| git_last_commit: 87c09c4 |
| git_last_commit_date: 2023-04-25 10:43:05 -0400 (Tue, 25 Apr 2023) |
| Back to Build/check report for BioC 3.17 experimental data |
|
This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 47/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ccdata 1.26.0 (landing page) Alex Pickering
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | |||||||
|
To the developers/maintainers of the ccdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ccdata |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ccdata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ccdata_1.26.0.tar.gz |
| StartedAt: 2023-10-12 11:03:47 -0400 (Thu, 12 Oct 2023) |
| EndedAt: 2023-10-12 11:07:13 -0400 (Thu, 12 Oct 2023) |
| EllapsedTime: 206.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ccdata.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ccdata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ccdata_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/ccdata.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘ccdata/DESCRIPTION’ ... OK
* this is package ‘ccdata’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ccdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 894.6Mb
sub-directories of 1Mb or more:
data 894.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
./man/cmap_es.Rd: non-ASCII input and no declared encoding
./man/cmap_var.Rd: non-ASCII input and no declared encoding
./man/l1000_es.Rd: non-ASCII input and no declared encoding
problems found in ‘cmap_es.Rd’, ‘cmap_var.Rd’, ‘l1000_es.Rd’
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.17-data-experiment/meat/ccdata.Rcheck/00check.log’
for details.
ccdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ccdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘ccdata’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ccdata)